PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028112171.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 174aa MW: 19439.2 Da PI: 6.7421 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.7 | 2.3e-44 | 6 | 105 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q++ql+ +la XP_028112171.1 6 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARMRDPVYGCVGAISYLQNQVSQLQMQLA 100 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_028112171.1 101 VAQTE 105 99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MGGNSPCASC KLLRRRCAKD CIFAPYFPPD DPHKFAIVHK VFGASNVSKM LQELPIHQRG 60 DAVSSLVYEA NARMRDPVYG CVGAISYLQN QVSQLQMQLA VAQTEMLCIQ MQQEPALPMT 120 MTQIDPDEKS LLLTNNNNDL LSSNNNFNSL PQYLNFASSS NVIQDPLKRE SLWT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 5e-80 | LBD family protein |