PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028111928.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 25017.6 Da    PI: 9.9317
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028111928.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.81.7e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+tgk++ey +
  XP_028111928.1  9 KRIENATNRQVTYSKRRNGIMKKAQELTVLCDAKVSLIMFSNTGKFHEYTT 59
                    79***********************************************75 PP
2K-box76.75.9e-2671175198
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqre......qRhll.GedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                     yqk+ g +l+++++e++q +l+kLk+ +++L+re      +R+++ GedL++Ls++eL  Leq++  sl+ +R++K+++l++q+e+ +kk ++++
  XP_028111928.1  71 YQKTLGIDLWSTHYERMQGHLKKLKEINNKLRREigvcgwHRQRVgGEDLNDLSIQELCGLEQKMAASLTDVRQRKYHVLKTQTETYKKKVRSME 165
                     78899999************************663344446887736************************************************ PP

           K-box  89 eenkaLrkkl 98 
                     e++ +L  ++
  XP_028111928.1 166 ERHGNLLLNF 175
                     ***9997666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
MGRGKIEIKR IENATNRQVT YSKRRNGIMK KAQELTVLCD AKVSLIMFSN TGKFHEYTTP  60
NITTKKIYDQ YQKTLGIDLW STHYERMQGH LKKLKEINNK LRREIGVCGW HRQRVGGEDL  120
NDLSIQELCG LEQKMAASLT DVRQRKYHVL KTQTETYKKK VRSMEERHGN LLLNFEAKCE  180
DPQFGTLFEN DRDYDYAFRL HHGGGFGSNE LRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-64MIKC_MADS family protein