PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028111248.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 504aa    MW: 56294.9 Da    PI: 6.2544
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028111248.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS357.42.1e-1091455002374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +lLlecA a+s ++l +a+++L +l ++asp+g +  +R+++yf +A+a+r+ +s+ ++++ l   e+          ++++f+++sP++kf+h
  XP_028111248.1 145 LTLLLECAVAISVDNLGEAHRMLLELTQMASPYGpSCAERVVSYFSKAMASRVINSWLGICSPLINHES-------IHCSFQVFNNISPFIKFAH 232
                     579*******************************9999***********************87755554.......456789************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +t NqaIlea++g +rvHiiD+di+qGlQWpaL++ La+R egpp++R+Tg+g+    s e l etg++L++fA++lg++fef++ +ak++ dl+
  XP_028111248.1 233 FTSNQAILEAFHGWSRVHIIDLDIMQGLQWPALFHILATRLEGPPHVRMTGMGA----SIELLIETGKQLSNFARRLGMSFEFHP-IAKKFGDLD 322
                     ******************************************************....9**************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     +++L++++gEa+aV++    h+l+d +++  +    +++l+++l P+v+++veq++   ++sFl+rf+ +l+yys++fdsl a lp++++ r+ v
  XP_028111248.1 323 MSMLQIRRGEAIAVHWLQ--HSLYDATGPDWK----TMRLLQGLAPRVITLVEQDMAAHGGSFLDRFVGSLHYYSTIFDSLGAFLPSDDQSRHGV 411
                     *****************9..999999999888....*********************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+ ll rei n++a  g +r  +  ++++Wr+ l +  F +vp+s + ++qa+l+l++++ ++gy++ + +g+l lgWkd +L+++SaW+
  XP_028111248.1 412 EHCLLYREINNILAIGGLARSGED-KYRNWRSELARNCFMQVPMSGNSMAQAQLILNMFPpVQGYSLVQGDGALRLGWKDTSLFTASAWT 500
                     *******************77665.5***************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    
MKGKFQVVHG VDLIQPQEQW DYTNLEYTGI NSNPGLRSAV QNNCTTNLEK NELSMWVEHV  60
TKQLIGDLPE SGTDESFQTD TTMVYDEDNT ALRPTKTTGT RSHFDGAGDQ LQWCNYFGDQ  120
TKFTEINGGG SKGLSRLDEH GLSLLTLLLE CAVAISVDNL GEAHRMLLEL TQMASPYGPS  180
CAERVVSYFS KAMASRVINS WLGICSPLIN HESIHCSFQV FNNISPFIKF AHFTSNQAIL  240
EAFHGWSRVH IIDLDIMQGL QWPALFHILA TRLEGPPHVR MTGMGASIEL LIETGKQLSN  300
FARRLGMSFE FHPIAKKFGD LDMSMLQIRR GEAIAVHWLQ HSLYDATGPD WKTMRLLQGL  360
APRVITLVEQ DMAAHGGSFL DRFVGSLHYY STIFDSLGAF LPSDDQSRHG VEHCLLYREI  420
NNILAIGGLA RSGEDKYRNW RSELARNCFM QVPMSGNSMA QAQLILNMFP PVQGYSLVQG  480
DGALRLGWKD TSLFTASAWT SHAP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-141GRAS family protein