PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028111176.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 258aa MW: 27224 Da PI: 9.0363 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.2 | 1.5e-09 | 65 | 90 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ f Ck+Gd+C+FaHg+ XP_028111176.1 65 KTKLCNKFNTAEGCKFGDKCRFAHGE 90 8***********************96 PP | |||||||
2 | zf-CCCH | 33.1 | 9.4e-11 | 225 | 249 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C fa+ G C +G+rC+FaHg XP_028111176.1 225 YKTKMCESFAK-GSCTFGERCHFAHG 249 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MGLPRHLCST SGCSFGDGCH FLHYVPGGFS AVAQMTNLGG NPIPPVRNGM APPPPFSDGP 60 APTAKTKLCN KFNTAEGCKF GDKCRFAHGE WELGKPNIPT YEDPRSMGSM GTRLTGRVEP 120 HQPNLAAAAN FGASATAKIS IDASLGGAII GKGGVNSKQI CRLTGVKLSI KEHDSDPNQK 180 NIELEGTFDQ IKQASAMVRD LIMNVGAVNR PTKPTHAAAP ASNNYKTKMC ESFAKGSCTF 240 GERCHFAHGA GELRKPVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 1e-57 | C3H family protein |