PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028111007.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 1161aa MW: 130684 Da PI: 7.9698

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028111007.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.3	0.001	1070	1093	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk Fs++ + + H+r+H XP_028111007.1 1070 QCPhkGCGKKFSSHKYAVIHQRVH 1093 69999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence
MRDVKIPNWL KGLPLAPEFR PTDTEFADPI XHISRIEKEA SAFGICKVIP PLPKPSKKYV 60 ISNLNKSFLK CPELGPNTNL AEVCSSSKTD SGNEANDREA RAVFTTRHQE LGQNARTIKK 120 VVRKQVWQSG QIYTPEQFES KSKTFARSQF GMVKDLSPLD IEALFWKAVS EKPINIEYAN 180 DVPGSGFGEP EGSFQYFYRQ TRRRKRTYNR NSGGSCDSKK YQVNNTSNGG ENRGVSTKNS 240 SNSFRETSRV SISLPTILSN QTSGCSRQKS SNAANEMEGT AGWKLSNSPW NLQVIARSPG 300 SLTRFMPDDI PGVTSPMAYI GMLFSWFAWH VEDHELHSLN FLHTGSPKTW YAVPGDYAFS 360 FEEVIRNQAY GGNIDHLASL TLLGEKTTLL SPEVVVKSGI PCCRLIQNPG EFVATFPRAY 420 HVGFSHGFNC GEAANFGTSK WLKVAKEAAV RRAAMNYLPM LSHQQLLYLL TMSFVSRVPR 480 SLMPGARKSR LRDCQKEERE LSVKKAFLED ILSENNLLTI LLGKNSSCHA VLWDLESLPS 540 PSKESERCIA TVVTTPREDV CSENKNIETM DDLYFNDADF SCDFEVDSRT LACVACGILG 600 FPFMCVVQPS ERVSMSLLQD VGVSKPLRCH SHPVLHDMIE GFISDGMKDK IEQNESNVLH 660 HQNGAFSSAK SIKSTLLRGS INFQKMKAHA AVIAEEIGSP FGYNEIPLDN ASQEGLNLID 720 LAIDDEEHDE CREDWTSKLS INLRHCVKVR KNSPSEQVHH ALALGGLFSD RCPSSNTFNL 780 KWPSRKSWSK QNSYHSVHMK PSESIQMEKD EVWGEESDGI MVRREGELIQ YSRRFKSKPG 840 DYATASKIFE HPAKHMHNEV SVTNSGGPDE SITLIAVEST ENFDIQRENQ ITEEISMKYV 900 ACADASEGQC NIQSDGDVLM KEAPDLVNTM NTDEVLSSLE NCSSHDKIEL ENTGFTMVCP 960 RSTAQNGRKR RIDVELQTED QLDFNCFIKS PCERLRPRAA KDAKISGIDS NSMFEDKPAV 1020 KSVRKSSNDF LSRKNKKKNE NVKGSHRCDL EGCLMKFQTK ADLLLHKRNQ CPHKGCGKKF 1080 SSHKYAVIHQ RVHDDDRPLK CLWKGCTMTF KWAWARTEHL RVHTGERPYQ CKVEGCGLTF 1140 RFVSDFSRHR WKTGHYVNVP T

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence

MRDVKIPNWL KGLPLAPEFR PTDTEFADPI XHISRIEKEA SAFGICKVIP PLPKPSKKYV  60
ISNLNKSFLK CPELGPNTNL AEVCSSSKTD SGNEANDREA RAVFTTRHQE LGQNARTIKK  120
VVRKQVWQSG QIYTPEQFES KSKTFARSQF GMVKDLSPLD IEALFWKAVS EKPINIEYAN  180
DVPGSGFGEP EGSFQYFYRQ TRRRKRTYNR NSGGSCDSKK YQVNNTSNGG ENRGVSTKNS  240
SNSFRETSRV SISLPTILSN QTSGCSRQKS SNAANEMEGT AGWKLSNSPW NLQVIARSPG  300
SLTRFMPDDI PGVTSPMAYI GMLFSWFAWH VEDHELHSLN FLHTGSPKTW YAVPGDYAFS  360
FEEVIRNQAY GGNIDHLASL TLLGEKTTLL SPEVVVKSGI PCCRLIQNPG EFVATFPRAY  420
HVGFSHGFNC GEAANFGTSK WLKVAKEAAV RRAAMNYLPM LSHQQLLYLL TMSFVSRVPR  480
SLMPGARKSR LRDCQKEERE LSVKKAFLED ILSENNLLTI LLGKNSSCHA VLWDLESLPS  540
PSKESERCIA TVVTTPREDV CSENKNIETM DDLYFNDADF SCDFEVDSRT LACVACGILG  600
FPFMCVVQPS ERVSMSLLQD VGVSKPLRCH SHPVLHDMIE GFISDGMKDK IEQNESNVLH  660
HQNGAFSSAK SIKSTLLRGS INFQKMKAHA AVIAEEIGSP FGYNEIPLDN ASQEGLNLID  720
LAIDDEEHDE CREDWTSKLS INLRHCVKVR KNSPSEQVHH ALALGGLFSD RCPSSNTFNL  780
KWPSRKSWSK QNSYHSVHMK PSESIQMEKD EVWGEESDGI MVRREGELIQ YSRRFKSKPG  840
DYATASKIFE HPAKHMHNEV SVTNSGGPDE SITLIAVEST ENFDIQRENQ ITEEISMKYV  900
ACADASEGQC NIQSDGDVLM KEAPDLVNTM NTDEVLSSLE NCSSHDKIEL ENTGFTMVCP  960
RSTAQNGRKR RIDVELQTED QLDFNCFIKS PCERLRPRAA KDAKISGIDS NSMFEDKPAV  1020
KSVRKSSNDF LSRKNKKKNE NVKGSHRCDL EGCLMKFQTK ADLLLHKRNQ CPHKGCGKKF  1080
SSHKYAVIHQ RVHDDDRPLK CLWKGCTMTF KWAWARTEHL RVHTGERPYQ CKVEGCGLTF  1140
RFVSDFSRHR WKTGHYVNVP T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1024	1037	RKSSNDFLSRKNKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein