PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028110768.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1009aa MW: 112059 Da PI: 6.7906

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028110768.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125	3e-39	156	233	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dl++ k+yh rhkvC++hska ++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrkk++ XP_028110768.1 156 VCQVDDCRVDLTNSKDYHIRHKVCDMHSKAGSALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKKHP 233 6**************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1009 aa Download sequence
MEEAQFGGKV HHLCGPVMPD LKAAGKKGVE WDLNDWKWDG DLFTAAPPLN SVPSDCRSRQ 60 LFSLVSEIPI NPGLSNTSLA CSDETNLGND KGKRVLEKRR RVVVVEDEEE CNDEARSLNL 120 KLGGQVYPIT QAEMENSEGR CGKKSKVVAT SSNCSVCQVD DCRVDLTNSK DYHIRHKVCD 180 MHSKAGSALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK KHPENVVNGV 240 SLNDEHGSSY LLVSLLRILA NMHTNSLDQT KDQDMLSHLL RNLTSMSGSI NGRNISGLLP 300 GSQDLQKATM SLGTPEKDSL RPNGQCMAFE GTEKRTFTDN TQGGLFQTPC AIPYPARDCI 360 PTKASAPDNG VGRMKLKDID LNTVYDGSED CSENLESYHA PVNLGIGSLD CTLRGHHGGQ 420 ESSPPQTSGN TGSTSTQSLS SSSREAQSRT DRIVFKLFGK DPSDFPLVLR KQILDWLSHS 480 PTEIESYIRP GCIILTIYLR LGKSTWEELY CDLNSSLTRL LDASNDSFWR TGWMYTRVQQ 540 RVAFIYDGQV VLDTLLPLKS HKNSRILSIK PVAVSFSERT QFLVKGFNLS QSTTRLLCAL 600 EGKYLVQESC SDMMEGVDTF VDGNEIQCLS FSCSIPNVSG RGFIEVEDHS FSNSFFPFIV 660 TEQDVCSEIC TLESAIEVAE IADDIHAESE MVEARNNALD FIHEMGWLLH RSQLKFRLGS 720 MDPNLDLFPF ERFRWLMEFS MEHDWCAVVK KLLGIVFNGT VDAGGHSSIE LALLDMGLLH 780 RAVRRNCRSM VEVLLRYIPT DVVDKPVSEQ QQHVNRGSNF LFRPDAIGPG GLTPLHIAAS 840 SDGSESVLDA LTDDPGSVGI EAWKGARDST GLTPNDYACL RSYYSYIHLV QKKINKKSGN 900 GHVVLDIPGA LLEYNITQKL TDGYKTAKVA SLDTEKNELK PIQRHCKACQ QKMAYGSCRT 960 SVAIYRPAML SLLAIAAVCV CAALLFKSPP KVVCVLQPFI WERLKYGAI

Sequence ? help Back to Top

Protein Sequence Length: 1009 aa Download sequence

MEEAQFGGKV HHLCGPVMPD LKAAGKKGVE WDLNDWKWDG DLFTAAPPLN SVPSDCRSRQ  60
LFSLVSEIPI NPGLSNTSLA CSDETNLGND KGKRVLEKRR RVVVVEDEEE CNDEARSLNL  120
KLGGQVYPIT QAEMENSEGR CGKKSKVVAT SSNCSVCQVD DCRVDLTNSK DYHIRHKVCD  180
MHSKAGSALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK KHPENVVNGV  240
SLNDEHGSSY LLVSLLRILA NMHTNSLDQT KDQDMLSHLL RNLTSMSGSI NGRNISGLLP  300
GSQDLQKATM SLGTPEKDSL RPNGQCMAFE GTEKRTFTDN TQGGLFQTPC AIPYPARDCI  360
PTKASAPDNG VGRMKLKDID LNTVYDGSED CSENLESYHA PVNLGIGSLD CTLRGHHGGQ  420
ESSPPQTSGN TGSTSTQSLS SSSREAQSRT DRIVFKLFGK DPSDFPLVLR KQILDWLSHS  480
PTEIESYIRP GCIILTIYLR LGKSTWEELY CDLNSSLTRL LDASNDSFWR TGWMYTRVQQ  540
RVAFIYDGQV VLDTLLPLKS HKNSRILSIK PVAVSFSERT QFLVKGFNLS QSTTRLLCAL  600
EGKYLVQESC SDMMEGVDTF VDGNEIQCLS FSCSIPNVSG RGFIEVEDHS FSNSFFPFIV  660
TEQDVCSEIC TLESAIEVAE IADDIHAESE MVEARNNALD FIHEMGWLLH RSQLKFRLGS  720
MDPNLDLFPF ERFRWLMEFS MEHDWCAVVK KLLGIVFNGT VDAGGHSSIE LALLDMGLLH  780
RAVRRNCRSM VEVLLRYIPT DVVDKPVSEQ QQHVNRGSNF LFRPDAIGPG GLTPLHIAAS  840
SDGSESVLDA LTDDPGSVGI EAWKGARDST GLTPNDYACL RSYYSYIHLV QKKINKKSGN  900
GHVVLDIPGA LLEYNITQKL TDGYKTAKVA SLDTEKNELK PIQRHCKACQ QKMAYGSCRT  960
SVAIYRPAML SLLAIAAVCV CAALLFKSPP KVVCVLQPFI WERLKYGAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	102	KRRRV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60030.1	0.0	SBP family protein