PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028110730.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 750aa MW: 83627.2 Da PI: 5.5764

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028110730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	121	143	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ff++ G C GdrC+F H+p XP_028110730.1 121 VACIFFQK-GLCLKGDRCHFLHSP 143 68****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 750 aa Download sequence
MVGGPPPQQQ SQTQPPSTPT APSAEEEALK RNTDCVYFLA SPLTCKKGAE CEYRHSDIAR 60 VNPRDCWYWL NGNCLNPKCA FRHPPLDGLL GTQVPTPVGP SLPPSLTATT PVASNSVKQP 120 VACIFFQKGL CLKGDRCHFL HSPIAVNNKV PQVAVATTVS EPPTLKKAFG GLAKFNQEQK 180 VTQANVPKPA EFLSQVKPLA KFETAPPKNG VAIDRHVPTP PSVLDDQSPP RYKPTNVPAP 240 TNGNSISRSN RVQQVQVPDD HGILNSSRDA DEFSREISPG FDVLVDDELR ESDYYHNEDP 300 YGRTRGHEGR NLNPMNDFDI GHSVDYDSMV DVDRDMYRDS LGYDSYEHVH GQYAREQRRA 360 SSSERMLGGS GHLERRRYPR ANSPDQIVEL DLRHRLSKQR RVNGLRSVIS HDRVRDNTAE 420 DRGYRGSSRR DAHHLPPNES SVSSRLRGRI KLPGRSSSPV NGSDLHPESE MERGRNRGRL 480 SPGRSQISTL QGRLRDRIKG RVQEDVNNEG GSFRAPPPRM RDLINDNNAD FAAPKRLSQL 540 KGGKNAEGNE QQMNDQQPFS LGKRKYPKLE SHQQSESDLS FEGPKPLSEI LKRKRATVPG 600 TSSMSGNIED SNQMEEKESF MSGLKTATSV TSLVSKEQIK ESKSGTADVV GTEGRDVLIP 660 REVNKSADDQ YPLQRNESEL ETEEGMIVDD TIEDHEPETF DQRDGESDYE QVDGEDYNLD 720 EAENGEHEEY LDDEDDDGDD FAKKIGVMFS

Sequence ? help Back to Top

Protein Sequence Length: 750 aa Download sequence

MVGGPPPQQQ SQTQPPSTPT APSAEEEALK RNTDCVYFLA SPLTCKKGAE CEYRHSDIAR  60
VNPRDCWYWL NGNCLNPKCA FRHPPLDGLL GTQVPTPVGP SLPPSLTATT PVASNSVKQP  120
VACIFFQKGL CLKGDRCHFL HSPIAVNNKV PQVAVATTVS EPPTLKKAFG GLAKFNQEQK  180
VTQANVPKPA EFLSQVKPLA KFETAPPKNG VAIDRHVPTP PSVLDDQSPP RYKPTNVPAP  240
TNGNSISRSN RVQQVQVPDD HGILNSSRDA DEFSREISPG FDVLVDDELR ESDYYHNEDP  300
YGRTRGHEGR NLNPMNDFDI GHSVDYDSMV DVDRDMYRDS LGYDSYEHVH GQYAREQRRA  360
SSSERMLGGS GHLERRRYPR ANSPDQIVEL DLRHRLSKQR RVNGLRSVIS HDRVRDNTAE  420
DRGYRGSSRR DAHHLPPNES SVSSRLRGRI KLPGRSSSPV NGSDLHPESE MERGRNRGRL  480
SPGRSQISTL QGRLRDRIKG RVQEDVNNEG GSFRAPPPRM RDLINDNNAD FAAPKRLSQL  540
KGGKNAEGNE QQMNDQQPFS LGKRKYPKLE SHQQSESDLS FEGPKPLSEI LKRKRATVPG  600
TSSMSGNIED SNQMEEKESF MSGLKTATSV TSLVSKEQIK ESKSGTADVV GTEGRDVLIP  660
REVNKSADDQ YPLQRNESEL ETEEGMIVDD TIEDHEPETF DQRDGESDYE QVDGEDYNLD  720
EAENGEHEEY LDDEDDDGDD FAKKIGVMFS