PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028110581.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 205aa    MW: 23588.6 Da    PI: 8.2567
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028110581.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34e-181563149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k i ++  r +tfskRr+g++ KA+ELS+LC+++ a+++fs  gk + +
  XP_028110581.1 15 KMIADENARRITFSKRRHGLFNKASELSTLCGVDMAIVLFSMGGKAFSF 63
                    57899999**********************************9997766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    
MERKQTQGRK KIEMKMIADE NARRITFSKR RHGLFNKASE LSTLCGVDMA IVLFSMGGKA  60
FSFGKPNVDS VVDRFLNQNA QPSEGVSSHA TRHDDATVHQ LNQQFHDLRK RLEAEKKKEK  120
IVQNMSNKNY GLLSCRFDAY VNQLDLQQLE QLKKSMEELK KNVAQRVDEL NSEGSSKHAQ  180
EEEQVENTEI NDNDVSTIPH DWLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.18e-30M-type_MADS family protein