PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109967.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

FAR1

Protein Properties

Length: 610aa MW: 69873.5 Da PI: 9.3356

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109967.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.5	1.6e-11	59	145	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY +Y k++GF + ++++ + +g+++ C++ +++++++ + +++ ++++ ka+++ ++++dg++++t+++leH+H+l+p XP_028109967.1 59 FYVKYTKHCGFAIAFRSQNLT-SDGKVKYFGIECTRARFKTKRSEI--NPLEPSLSSKIYYKARVRASLQNDGRYKLTTVVLEHTHDLNP 145 9***********9998887.7888************9988..8999*********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 610 aa Download sequence
MSIVFNFEAT MDIDSNNNSL NGSEEVEEQD NNLYINENGE VEEPNKGMYF SSKQEVYAFY 60 VKYTKHCGFA IAFRSQNLTS DGKVKYFGIE CTRARFKTKR SEINPLEPSL SSKIYYKARV 120 RASLQNDGRY KLTTVVLEHT HDLNPTDSRH FAMNKRILTP VKRRLEVNDA AGIGVARNFH 180 SMVVEAGGYE ALTFDERDAR NYIENAKRLR LGLGDAESVT LYFHKMQQQN SNFYLAIDLD 240 EDGRMRNLFW ADARSRAAYK AFGDVSILFG CGLLSNENTE TFVWLFKEWL SCMSDVPPKA 300 IIADQCRAMQ HAIEIVFPQA RHRWCLWHVM KKIPEKLRGY SQYEGIKVAL QNVVYDSFTK 360 DEFEGNWLAM VTKFNVNDNE WLGYYTRSIY EVPNKYIVSR WRKDLERGYT WIPTTYTNFG 420 AAINPKLHDS YHKALDDILE LATNDDGKHK VIQLGLREIK DRVKTIASST ASNMPCTSTV 480 PPSTSIVLPS HSSPKSPPRM NTTKASNTRK VLSPLVARRR GRPCTKRKVS KVDEIVNRLK 540 RKNKKTIPAQ VPQDQAYYVP SMVGTQDSMY VPAWVCTMKT SDNIGSTSGM VNNVKMPNFH 600 NRVDLVFECT

Sequence ? help Back to Top

Protein Sequence Length: 610 aa Download sequence

MSIVFNFEAT MDIDSNNNSL NGSEEVEEQD NNLYINENGE VEEPNKGMYF SSKQEVYAFY  60
VKYTKHCGFA IAFRSQNLTS DGKVKYFGIE CTRARFKTKR SEINPLEPSL SSKIYYKARV  120
RASLQNDGRY KLTTVVLEHT HDLNPTDSRH FAMNKRILTP VKRRLEVNDA AGIGVARNFH  180
SMVVEAGGYE ALTFDERDAR NYIENAKRLR LGLGDAESVT LYFHKMQQQN SNFYLAIDLD  240
EDGRMRNLFW ADARSRAAYK AFGDVSILFG CGLLSNENTE TFVWLFKEWL SCMSDVPPKA  300
IIADQCRAMQ HAIEIVFPQA RHRWCLWHVM KKIPEKLRGY SQYEGIKVAL QNVVYDSFTK  360
DEFEGNWLAM VTKFNVNDNE WLGYYTRSIY EVPNKYIVSR WRKDLERGYT WIPTTYTNFG  420
AAINPKLHDS YHKALDDILE LATNDDGKHK VIQLGLREIK DRVKTIASST ASNMPCTSTV  480
PPSTSIVLPS HSSPKSPPRM NTTKASNTRK VLSPLVARRR GRPCTKRKVS KVDEIVNRLK  540
RKNKKTIPAQ VPQDQAYYVP SMVGTQDSMY VPAWVCTMKT SDNIGSTSGM VNNVKMPNFH  600
NRVDLVFECT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	522	532	RPCTKRKVSKV
2	526	545	KRKVSKVDEIVNRLKRKNKK
3	527	545	RKVSKVDEIVNRLKRKNKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	2e-54	FAR1 family protein