PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109475.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 742aa    MW: 84007.5 Da    PI: 5.5106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109475.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.45.5e-1073677391373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+ v+++d + a + L+++++++sp+gd +qRla+ f++ L+arla++ s++  al++++ s    +e+l+a++l++ ++P+ k++ 
  XP_028109475.1 367 LRTLLINCAQSVAADDRRIAYEQLKQIRQNCSPSGDGFQRLAHIFANSLEARLAGTASQILGALASKRIS---AVEKLKAYQLYFAACPYKKIAL 458
                     6789***************************************************999999999999988...9********************* PP

            GRAS  96 ltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                     + aN++I++ + ++  +++Hi+Df+i +G+QWp+++q L++ p+gpp+lRiTg+++p++g   +e +ee g+rLak++e+++vpf++++ +a+++
  XP_028109475.1 459 IFANKMIYDVAMKStkKKLHIVDFGILYGFQWPSFIQHLSALPGGPPELRITGIENPKPGfrPAELVEESGRRLAKYCERFNVPFQYHA-IAQKW 552
                     *********8887767999****************************************9*999*************************.7**** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     e++++e+L++ ++E+laVn+ ++ ++l+de+v ++++rd+vLkl+++++P++++ +  + ++n++ F++rf eal +ys+lfd+++++++re++ 
  XP_028109475.1 553 ETIKIEDLNLCSDEVLAVNSLFRFKNLMDETVMVDNPRDAVLKLIRKMKPDIFISSIINGSYNAPFFVTRFREALFHYSSLFDMFDTTMSREDQG 647
                     *********************************************************************************************** PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     r+++E  +lgre++nvvaceg er+er et+++W+ r +++GFk +pl++++ k+ +  +++ + + ++++++ ++l++gWk+r   + S+W
  XP_028109475.1 648 RMNYEVGFLGREVMNVVACEGLERVERPETYKQWQVRNMRSGFKILPLKQEVIKKLRGKVKEGYHKDFMIDDDGQWLLQGWKGRIYCASSCW 739
                     **************************************************************99888************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    
MDPHFTEFSN SINGFKPEDD TFLPNFDQSE NLVNTFKFKD DSVDLNFLDL SSFSPDPELG  60
YVAPTSGRTS EADSPDDSDF NDNVLKYINS ILNEENIEQK PSMFHDPLAL QATEKSLYAV  120
IGERYPASPD QPPLYFNQNV ESPSHYLFGS SSEQSTNSNT SGSNSVDSWI VDRRENKPSV  180
QSAPLGYPFE STLQWNDVNG PMDSSMSGRV VSNIFSNRQS ILQFNRGVEE ANRFLPPNNP  240
LITDLDSYAL PPESKEGASE VVVKVEKDER ESSSPNISKG RKHHHREDST LEEERSSKQS  300
AVFMEEAELT EMFDKVLLFT GQNTCCYGDE VQSEASKSSQ QNKQPHGSSG GKNRAKKEGN  360
KTEVVDLRTL LINCAQSVAA DDRRIAYEQL KQIRQNCSPS GDGFQRLAHI FANSLEARLA  420
GTASQILGAL ASKRISAVEK LKAYQLYFAA CPYKKIALIF ANKMIYDVAM KSTKKKLHIV  480
DFGILYGFQW PSFIQHLSAL PGGPPELRIT GIENPKPGFR PAELVEESGR RLAKYCERFN  540
VPFQYHAIAQ KWETIKIEDL NLCSDEVLAV NSLFRFKNLM DETVMVDNPR DAVLKLIRKM  600
KPDIFISSII NGSYNAPFFV TRFREALFHY SSLFDMFDTT MSREDQGRMN YEVGFLGREV  660
MNVVACEGLE RVERPETYKQ WQVRNMRSGF KILPLKQEVI KKLRGKVKEG YHKDFMIDDD  720
GQWLLQGWKG RIYCASSCWV PA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein