PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028109290.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

GRF

Protein Properties

Length: 469aa MW: 53640.4 Da PI: 6.5813

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028109290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.2	1.7e-24	181	224	1	44
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e XP_028109290.1 181 DPEPGRCRRTDGKKWRCSKEAYADSKYCERHMHRGRNRSRKPVE 224 79***************************************998 PP
2	QLQ	49	1.9e-17	106	136	2	32
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLl 32 +FTa+Q+q+L+ Q+l++Ky++++ P+Pp+Ll XP_028109290.1 106 PFTATQWQELECQALIFKYMVSGTPIPPDLL 136 8****************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MSMLQGYLWD SFHVIDYHQI ALDDDLKYEE WLVQIIKQQV KQLRNRTIPM VKVEWKEQYG 60 KEVTWENKDE MRQQNPHLYS NEETRAATNT APQFLQSGRE VQNRLPFTAT QWQELECQAL 120 IFKYMVSGTP IPPDLLCTLN TTFHSSSLSS KLSILHHQQP QQHHNGVGWE CFQMGFGRKI 180 DPEPGRCRRT DGKKWRCSKE AYADSKYCER HMHRGRNRSR KPVEVTPTSI NPLKTPTPAS 240 TAIPISSITK NPNPNPYYSS SSLSSATSNT HFLYPSHSSS SRLPGINLSS QDYRYGCGMK 300 EGVVDEHAFF SESCGAVRNY SGSTIDNPWQ VTPTTMGSSS SSLSHLKQRT CSALQNGYPF 360 LQLQGGLFTD NDDGSKQQNQ DQHQHQHFHV LGSEVPLKLE RDDDIDDKPQ KVMHHFFDEW 420 PKNKDSWLDD DEDDDSEDKS SNYVSASTTQ LSISIPNNTS HDFFLTHNG

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MSMLQGYLWD SFHVIDYHQI ALDDDLKYEE WLVQIIKQQV KQLRNRTIPM VKVEWKEQYG  60
KEVTWENKDE MRQQNPHLYS NEETRAATNT APQFLQSGRE VQNRLPFTAT QWQELECQAL  120
IFKYMVSGTP IPPDLLCTLN TTFHSSSLSS KLSILHHQQP QQHHNGVGWE CFQMGFGRKI  180
DPEPGRCRRT DGKKWRCSKE AYADSKYCER HMHRGRNRSR KPVEVTPTSI NPLKTPTPAS  240
TAIPISSITK NPNPNPYYSS SSLSSATSNT HFLYPSHSSS SRLPGINLSS QDYRYGCGMK  300
EGVVDEHAFF SESCGAVRNY SGSTIDNPWQ VTPTTMGSSS SSLSHLKQRT CSALQNGYPF  360
LQLQGGLFTD NDDGSKQQNQ DQHQHQHFHV LGSEVPLKLE RDDDIDDKPQ KVMHHFFDEW  420
PKNKDSWLDD DEDDDSEDKS SNYVSASTTQ LSISIPNNTS HDFFLTHNG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	4e-47	GRF family protein