PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109183.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family LBD
Protein Properties Length: 254aa    MW: 26136.7 Da    PI: 7.502
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.51.5e-40391391100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael
  XP_028109183.1  39 PCGACKFLRRKCVAGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHRRPDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAEL 133
                     7***********************9989******************************************************************* PP

          DUF260  95 allkee 100
                      +l+++
  XP_028109183.1 134 TYLQAH 139
                     *99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MSATANPSSS GSGGGTTSGN GGSGGNGGSG GTGGGGAGPC GACKFLRRKC VAGCIFAPYF  60
DSEQGAAHFA AVHKVFGASN VSKLLLHIPV HRRPDAVVTI CYEAQARLRD PVYGCVAHIF  120
ALQQQVVNLQ AELTYLQAHL ATLELPTPPP PPPQPLPMPP PLTILDLPSA ASMSAANDFS  180
SLFDPMAQSS WAMQHCQIDP RQFGATGALT DIPPPARGGI GSSDLQLLAR ELLHRYGSPP  240
VPCSEASPLP PHSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.13e-72LBD family protein