PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028109159.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 531aa    MW: 58746.4 Da    PI: 5.4688
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028109159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.94.8e-941715302374
            GRAS   2 velLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                     v+ L+++A++++s++l+la+ +Larl+++  +sp g+p+qR+a+yf+eAL++ +++      ++ +++++s+++++++++a+k fs vsPi+ fs
  XP_028109159.1 171 VDELVRAADCFESNELQLAHVILARLNQQqlRSPVGKPLQRAAFYFKEALQSLIMG------STRSTRNSSSSEVVQAIKAYKNFSIVSPIVMFS 259
                     678************************9888*************************......677778888888********************* PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++taNqaIleav+g+  +H++Dfd++ G+QW++++++ a+R+    +++p lRiT+v+++e     e + ++++L++fA+el++ fe+++++ ++
  XP_028109159.1 260 NFTANQAILEAVDGSMFIHVVDFDMGFGGQWASFMKEVADRAesrkSNTPILRITAVVPEE--YGVESRLIRDNLNQFAQELEIGFEIEFVLIRT 352
                     ***************************************9986666779**********66..8899999************************* PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsl.eaklp 276
                     +e l+++++++ +gE++aV l+  +++ l          + +L+ + ++sP+vvvvv+ e  ad+ +++s+ + ++  le++s+++++l +a+ +
  XP_028109159.1 353 FEFLSFKAIKFMEGEKTAVLLSPTIFHRL---------GTGFLNDLHQISPHVVVVVDGEgvADCgGQPSLRRSVIAGLEFHSTVLETLeAANGG 438
                     ***********************999998.........358*******************88899888899999***************666667 PP

            GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       +e+ +k+E ++++++iv +v ++  +       +  Wre + +aG++ v ls +a+ qa++ll+kv ++g++v +++g++vl+W+dr+Lv++S
  XP_028109159.1 439 GGEEWIRKIEMFVMRPRIVAAVEAAVGR------VAPPWREGFAAAGMRGVGLSRFAEFQAECLLAKVRVRGFHVAKREGEMVLCWHDRALVATS 527
                     77799****************9988876......789********************************************************** PP

            GRAS 372 aWr 374
                     aWr
  XP_028109159.1 528 AWR 530
                     **8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    
MKVQFTSAQT HQSTTLKPLS STNTAAQSTS STTTTTTTNT NFCYEPKSVL DLRRSPSPIA  60
ADPNSDAPSF SDALSRFDDA SLEFDDHIRN NLEDWESLMR ELGLHNDSSP AAAALRSIVP  120
QSNHIDPQFP ILSDNNPPPP HSFDLVPNNF PLSDSNSFDF CTDFHIGFNF VDELVRAADC  180
FESNELQLAH VILARLNQQQ LRSPVGKPLQ RAAFYFKEAL QSLIMGSTRS TRNSSSSEVV  240
QAIKAYKNFS IVSPIVMFSN FTANQAILEA VDGSMFIHVV DFDMGFGGQW ASFMKEVADR  300
AESRKSNTPI LRITAVVPEE YGVESRLIRD NLNQFAQELE IGFEIEFVLI RTFEFLSFKA  360
IKFMEGEKTA VLLSPTIFHR LGTGFLNDLH QISPHVVVVV DGEGVADCGG QPSLRRSVIA  420
GLEFHSTVLE TLEAANGGGG EEWIRKIEMF VMRPRIVAAV EAAVGRVAPP WREGFAAAGM  480
RGVGLSRFAE FQAECLLAKV RVRGFHVAKR EGEMVLCWHD RALVATSAWR C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-132GRAS family protein