PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028108198.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 314aa    MW: 34951.9 Da    PI: 9.2888
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028108198.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.21.5e-096992226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    +telC  f + G+C +Gd+C+F Hg
  XP_028108198.1 69 RTELCLQFKK-GHCTFGDTCRFVHG 92
                    69********.*************8 PP

2zf-CCCH19.41.9e-06130151425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     +lCr+f  +  C+yG+rC+F H
  XP_028108198.1 130 KLCRRFCNGEVCPYGERCHFLH 151
                     79******66************ PP

3zf-CCCH37.83.2e-12203228126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ + +tG C++G +C+FaHg
  XP_028108198.1 203 WKTKICKKWEATGNCPFGVNCCFAHG 228
                     8************************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    
MDQTLKTLNH THQNFNPPIE SGDCAVNFWS QSLTCHQQFA NVSHVEYPSF KKPRTSGLIN  60
EPTTGIPLRT ELCLQFKKGH CTFGDTCRFV HGIGIGGTRK PVPHRQELMA RETNVIKNGN  120
EDHRIISAMK LCRRFCNGEV CPYGERCHFL HEAPGKFRKS FAVSIGTSGP GGFSRNGCDQ  180
LEYKPSVHSS LDANGVAQKP VFWKTKICKK WEATGNCPFG VNCCFAHGHT ELQKSGSQAQ  240
AAMESGNVSP SKMIPTTATH TSLSSTRNGI ACEQQMQVKK RLFKWKGFEK MSRIYADWID  300
DMPLKHSSLS KVGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.19e-46C3H family protein