PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028108198.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 314aa MW: 34951.9 Da PI: 9.2888 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.2 | 1.5e-09 | 69 | 92 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +telC f + G+C +Gd+C+F Hg XP_028108198.1 69 RTELCLQFKK-GHCTFGDTCRFVHG 92 69********.*************8 PP | |||||||
2 | zf-CCCH | 19.4 | 1.9e-06 | 130 | 151 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 +lCr+f + C+yG+rC+F H XP_028108198.1 130 KLCRRFCNGEVCPYGERCHFLH 151 79******66************ PP | |||||||
3 | zf-CCCH | 37.8 | 3.2e-12 | 203 | 228 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +tG C++G +C+FaHg XP_028108198.1 203 WKTKICKKWEATGNCPFGVNCCFAHG 228 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence |
MDQTLKTLNH THQNFNPPIE SGDCAVNFWS QSLTCHQQFA NVSHVEYPSF KKPRTSGLIN 60 EPTTGIPLRT ELCLQFKKGH CTFGDTCRFV HGIGIGGTRK PVPHRQELMA RETNVIKNGN 120 EDHRIISAMK LCRRFCNGEV CPYGERCHFL HEAPGKFRKS FAVSIGTSGP GGFSRNGCDQ 180 LEYKPSVHSS LDANGVAQKP VFWKTKICKK WEATGNCPFG VNCCFAHGHT ELQKSGSQAQ 240 AAMESGNVSP SKMIPTTATH TSLSSTRNGI ACEQQMQVKK RLFKWKGFEK MSRIYADWID 300 DMPLKHSSLS KVGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 9e-46 | C3H family protein |