PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028108154.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | NF-YC | ||||||||
Protein Properties | Length: 259aa MW: 28726.4 Da PI: 6.3028 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 173.6 | 2.1e-54 | 81 | 184 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+ fw++q ie+++dfknh+lPlarikki+kadedv+misaeaPv++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+tr +ifdfl XP_028108154.1 81 QLQGFWASQyqeIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRNEIFDFL 175 799****99889*********************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_028108154.1 176 VDIVPREDL 184 ******987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence |
MDQQGHGQPP VMGVVGSSAQ MPYGVGPYQA NQMMRPSAPP PVGSTQSPQT GGTSASPAQL 60 AQHQLGYPHI HQQQQQQLQQ QLQGFWASQY QEIEQTSDFK NHSLPLARIK KIMKADEDVR 120 MISAEAPVVF ARACEMFILE LTLRSWNHTE ENKRRTLQKN DIAAAITRNE IFDFLVDIVP 180 REDLKDEVLA SMPRGTLPVG GPTEGLPYYY MPPQHAPQVG APGMFMGKPV DQALYGQQSN 240 PYAAAQQMWP HQQQPPADS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08970.3 | 1e-86 | NF-YC family protein |