PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107627.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 437aa MW: 47206.6 Da PI: 7.8755

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107627.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.4e-11	67	92	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_028107627.1 67 PGEPDCIYYLRTGLCGYGTNCRFNHP 92 5789*********************8 PP
2	zf-CCCH	30.6	5.7e-10	97	117	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tGtCkyG++Ck++H++ XP_028107627.1 97 QYYLKTGTCKYGPTCKYHHPR 117 59*****************96 PP
3	zf-CCCH	39.7	7.9e-13	138	162	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG Ck+G CkF+H++ XP_028107627.1 138 ERPCPFYMRTGLCKFGVECKFHHPQ 162 79*********************97 PP
4	zf-CCCH	35.5	1.7e-11	283	308	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tG CkyG+ Ck++H++ XP_028107627.1 283 DQPECRHFMSTGSCKYGSECKYNHPR 308 689*********************96 PP
5	zf-CCCH	35	2.4e-11	329	353	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+CkyG++CkF H+ XP_028107627.1 329 GQAVCSYYSLNGHCKYGPTCKFDHP 353 7899********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MYLPLSVSLC ASMPDNRQVQ SNGGVSNSSN PSIDNVEETI RRLKISTNDD NQDSGAVANS 60 CPYPDRPGEP DCIYYLRTGL CGYGTNCRFN HPATSGQYYL KTGTCKYGPT CKYHHPRDRH 120 GAGPVPLNVL GLPMRQEERP CPFYMRTGLC KFGVECKFHH PQPVTAGTML PIPGPAAYGS 180 SGSPIVASSG LHYVGGVSAL SLPRAPYISG THVQGPQTYM PYIVSPSQGI APTHVWNTYL 240 GCMSPGPSTS FVGSDLVYNS KNQGESGSSG LLNSIAYLPE RPDQPECRHF MSTGSCKYGS 300 ECKYNHPRER IPQLATNSLG PLGLPLRPGQ AVCSYYSLNG HCKYGPTCKF DHPLAGFPYN 360 YGGLSYSTVS VFDPSYYPYQ RNSTTVLSSE ASPSKSKAAS NKNQNTDTET LENPSEKAGS 420 PSHPLPASSE PRHNESD

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MYLPLSVSLC ASMPDNRQVQ SNGGVSNSSN PSIDNVEETI RRLKISTNDD NQDSGAVANS  60
CPYPDRPGEP DCIYYLRTGL CGYGTNCRFN HPATSGQYYL KTGTCKYGPT CKYHHPRDRH  120
GAGPVPLNVL GLPMRQEERP CPFYMRTGLC KFGVECKFHH PQPVTAGTML PIPGPAAYGS  180
SGSPIVASSG LHYVGGVSAL SLPRAPYISG THVQGPQTYM PYIVSPSQGI APTHVWNTYL  240
GCMSPGPSTS FVGSDLVYNS KNQGESGSSG LLNSIAYLPE RPDQPECRHF MSTGSCKYGS  300
ECKYNHPRER IPQLATNSLG PLGLPLRPGQ AVCSYYSLNG HCKYGPTCKF DHPLAGFPYN  360
YGGLSYSTVS VFDPSYYPYQ RNSTTVLSSE ASPSKSKAAS NKNQNTDTET LENPSEKAGS  420
PSHPLPASSE PRHNESD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32930.1	1e-93	C3H family protein