PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028107625.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family C3H
Protein Properties Length: 443aa    MW: 47883.2 Da    PI: 7.7462
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028107625.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.53.4e-115580126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    ++++ C +++rtG C yG +C+F+H+
  XP_028107625.1 55 PGEPDCIYYLRTGLCGYGTNCRFNHP 80
                    5789*********************8 PP

2zf-CCCH35.91.3e-1199123327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     ++ C ++++tGtCkyG++Ck++H++
  XP_028107625.1  99 QPDCGYYLKTGTCKYGPTCKYHHPR 123
                     789********************96 PP

3zf-CCCH39.78e-13144168327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f++rtG Ck+G  CkF+H++
  XP_028107625.1 144 ERPCPFYMRTGLCKFGVECKFHHPQ 168
                     79*********************97 PP

4zf-CCCH35.41.8e-11289314227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++Cr+f+ tG CkyG+ Ck++H++
  XP_028107625.1 289 DQPECRHFMSTGSCKYGSECKYNHPR 314
                     689*********************96 PP

5zf-CCCH352.4e-11335359226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C++++ +G+CkyG++CkF H+
  XP_028107625.1 335 GQAVCSYYSLNGHCKYGPTCKFDHP 359
                     7899********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    
MPDNRQVQSN GGVSNSSNPS IDNVEETIRR LKISTNDDNQ DSGAVANSCP YPDRPGEPDC  60
IYYLRTGLCG YGTNCRFNHP ATSGQGVQYR GELPERVGQP DCGYYLKTGT CKYGPTCKYH  120
HPRDRHGAGP VPLNVLGLPM RQEERPCPFY MRTGLCKFGV ECKFHHPQPV TAGTMLPIPG  180
PAAYGSSGSP IVASSGLHYV GGVSALSLPR APYISGTHVQ GPQTYMPYIV SPSQGIAPTH  240
VWNTYLGCMS PGPSTSFVGS DLVYNSKNQG ESGSSGLLNS IAYLPERPDQ PECRHFMSTG  300
SCKYGSECKY NHPRERIPQL ATNSLGPLGL PLRPGQAVCS YYSLNGHCKY GPTCKFDHPL  360
AGFPYNYGGL SYSTVSVFDP SYYPYQRNST TVLSSEASPS KSKAASNKNQ NTDTETLENP  420
SEKAGSPSHP LPASSEPRHN ESD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.11e-103C3H family protein