PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028107625.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 47883.2 Da PI: 7.7462 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.4e-11 | 55 | 80 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_028107625.1 55 PGEPDCIYYLRTGLCGYGTNCRFNHP 80 5789*********************8 PP | |||||||
2 | zf-CCCH | 35.9 | 1.3e-11 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_028107625.1 99 QPDCGYYLKTGTCKYGPTCKYHHPR 123 789********************96 PP | |||||||
3 | zf-CCCH | 39.7 | 8e-13 | 144 | 168 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG Ck+G CkF+H++ XP_028107625.1 144 ERPCPFYMRTGLCKFGVECKFHHPQ 168 79*********************97 PP | |||||||
4 | zf-CCCH | 35.4 | 1.8e-11 | 289 | 314 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tG CkyG+ Ck++H++ XP_028107625.1 289 DQPECRHFMSTGSCKYGSECKYNHPR 314 689*********************96 PP | |||||||
5 | zf-CCCH | 35 | 2.4e-11 | 335 | 359 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+CkyG++CkF H+ XP_028107625.1 335 GQAVCSYYSLNGHCKYGPTCKFDHP 359 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence |
MPDNRQVQSN GGVSNSSNPS IDNVEETIRR LKISTNDDNQ DSGAVANSCP YPDRPGEPDC 60 IYYLRTGLCG YGTNCRFNHP ATSGQGVQYR GELPERVGQP DCGYYLKTGT CKYGPTCKYH 120 HPRDRHGAGP VPLNVLGLPM RQEERPCPFY MRTGLCKFGV ECKFHHPQPV TAGTMLPIPG 180 PAAYGSSGSP IVASSGLHYV GGVSALSLPR APYISGTHVQ GPQTYMPYIV SPSQGIAPTH 240 VWNTYLGCMS PGPSTSFVGS DLVYNSKNQG ESGSSGLLNS IAYLPERPDQ PECRHFMSTG 300 SCKYGSECKY NHPRERIPQL ATNSLGPLGL PLRPGQAVCS YYSLNGHCKY GPTCKFDHPL 360 AGFPYNYGGL SYSTVSVFDP SYYPYQRNST TVLSSEASPS KSKAASNKNQ NTDTETLENP 420 SEKAGSPSHP LPASSEPRHN ESD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 1e-103 | C3H family protein |