PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028107624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 455aa MW: 49148.8 Da PI: 7.7257 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.6e-11 | 67 | 92 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C +++rtG C yG +C+F+H+ XP_028107624.1 67 PGEPDCIYYLRTGLCGYGTNCRFNHP 92 5789*********************8 PP | |||||||
2 | zf-CCCH | 35.8 | 1.3e-11 | 111 | 135 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_028107624.1 111 QPDCGYYLKTGTCKYGPTCKYHHPR 135 789********************96 PP | |||||||
3 | zf-CCCH | 39.7 | 8.3e-13 | 156 | 180 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f++rtG Ck+G CkF+H++ XP_028107624.1 156 ERPCPFYMRTGLCKFGVECKFHHPQ 180 79*********************97 PP | |||||||
4 | zf-CCCH | 35.4 | 1.8e-11 | 301 | 326 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tG CkyG+ Ck++H++ XP_028107624.1 301 DQPECRHFMSTGSCKYGSECKYNHPR 326 689*********************96 PP | |||||||
5 | zf-CCCH | 34.9 | 2.5e-11 | 347 | 371 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++ +G+CkyG++CkF H+ XP_028107624.1 347 GQAVCSYYSLNGHCKYGPTCKFDHP 371 7899********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence |
MYLPLSVSLC ASMPDNRQVQ SNGGVSNSSN PSIDNVEETI RRLKISTNDD NQDSGAVANS 60 CPYPDRPGEP DCIYYLRTGL CGYGTNCRFN HPATSGQGVQ YRGELPERVG QPDCGYYLKT 120 GTCKYGPTCK YHHPRDRHGA GPVPLNVLGL PMRQEERPCP FYMRTGLCKF GVECKFHHPQ 180 PVTAGTMLPI PGPAAYGSSG SPIVASSGLH YVGGVSALSL PRAPYISGTH VQGPQTYMPY 240 IVSPSQGIAP THVWNTYLGC MSPGPSTSFV GSDLVYNSKN QGESGSSGLL NSIAYLPERP 300 DQPECRHFMS TGSCKYGSEC KYNHPRERIP QLATNSLGPL GLPLRPGQAV CSYYSLNGHC 360 KYGPTCKFDH PLAGFPYNYG GLSYSTVSVF DPSYYPYQRN STTVLSSEAS PSKSKAASNK 420 NQNTDTETLE NPSEKAGSPS HPLPASSEPR HNESD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32930.1 | 1e-103 | C3H family protein |