PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028107367.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 182aa MW: 20955.9 Da PI: 9.5468 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.8 | 6e-13 | 8 | 49 | 1 | 42 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 ++i +++ r tf kR++g+lKK +EL +LC ++++ ii+ + XP_028107367.1 8 EFIADERVRRQTFRKRKAGLLKKLSELKTLCSVDACAIIYPT 49 57999999999****************************966 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence |
MGRMVEYEFI ADERVRRQTF RKRKAGLLKK LSELKTLCSV DACAIIYPTN TTGSVAQPDV 60 WPSPSEANHL LQRFKNLPSP QQAANMMNQE KFLTQNILRV SKNFDKEKQK NRGFDIEQQM 120 IKLLFEKNLH DFSNLDDLRD VASLLDAKIN LVNDKIENLA RDENGNEIRS GSRCGKEKQQ 180 SI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22590.2 | 2e-25 | M-type_MADS family protein |