PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028107208.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1092aa MW: 120350 Da PI: 8.0122

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028107208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.3	2.8e-40	161	238	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCevhsk++++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+q+ XP_028107208.1 161 MCQVDNCREDLSNAKDYHRRHKVCEVHSKSSKALVGKEMQRFCQQCSRFHPLTEFDEGKRSCRRRLAGHNRRRRKTQT 238 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1092 aa Download sequence
MEEVGAQVSP PIFIHQTLGG DRFREANPMA TKRSLPFHAP NFQQQQPGLT SGYNWNAKDW 60 VWDSVSFIAK PMESDVLSLA TATPVQPQSR PGQHRKSDRE GSGLPTLLKK NPVNEDDESL 120 RLKLGAGLNS FEESVSRPNK RVRSGSPGSG GGGSGSGSYP MCQVDNCRED LSNAKDYHRR 180 HKVCEVHSKS SKALVGKEMQ RFCQQCSRFH PLTEFDEGKR SCRRRLAGHN RRRRKTQTED 240 VSSSMLLPAN HDTSGNGDLD IVNLLTVLAH AQGNKEVKSS NGSSLPNKDQ LIQILSKINS 300 LPLPVEFEAK LPPVSGSSSR MTIPEQASSD NQSSRLNGNT TSPSTKDLLT VLSTTLAESS 360 PDALAILSQR SSQGADVDET KLACLDQALS LNMLKGASLE FPSVGGERSS TSSQSPVDYS 420 DSQIQETRAH LPLQLISSSP EDDSLPKLAS ARKYFSSTSS NPTDETSPLS SPPVVQKLFP 480 MQTTRETEPA RITTNGEVNK NVETSNARGC VTSLELFGRS NISANNGSFK SFPYKAGYTS 540 SSGSDQSPSS SNSDAQDRTG RIIFKLFGKN PSQFPESLRT EIYNWLSHSP SEMESYIRPG 600 CVVLSIYLSM PSSAWGQLEE NLLRHINSLI RDSDTDFWRD GRFLVHTGRR LASYKDGETC 660 HCKSWKAWRS PELISVSPLA IVGGEETSLF LRGRNLNIPG TKIHCTHMGG YLSKEVPGSS 720 GRETLYGEIS VVNFKVHGVA PGVLGRCFIE VENGFKGTSF PVIIADATIC QELRLLESEF 780 NEGAKVYDTI SEDQIHDLGK PRSKEEVLHF LNELGWLFQR KRNSSAIEVR DYTLARFKFL 840 FIFSVERDCC ALVKTLLDIL FERYLERVEP SRESLEMLSE IHLLNRAVKR RCRNMVDLLI 900 HYSVLSGNDT SKYIFPPNLV GPGGVTPLHQ AACTSSSDVM VDALTNDPQE IGLCCWTSLL 960 DANGLSPYAY ALTRNNHSYN RLVAHKLADR RNSQVSVSIG NEIDQQRLGA SLDHRQRSQF 1020 KQGPSSCSKC AVVASRYSRR MPGSRGFIHL PFMHSMLAIA AVCVCVCLFL RGRPDVGLVA 1080 PFEWESLGCG SS

Sequence ? help Back to Top

Protein Sequence Length: 1092 aa Download sequence

MEEVGAQVSP PIFIHQTLGG DRFREANPMA TKRSLPFHAP NFQQQQPGLT SGYNWNAKDW  60
VWDSVSFIAK PMESDVLSLA TATPVQPQSR PGQHRKSDRE GSGLPTLLKK NPVNEDDESL  120
RLKLGAGLNS FEESVSRPNK RVRSGSPGSG GGGSGSGSYP MCQVDNCRED LSNAKDYHRR  180
HKVCEVHSKS SKALVGKEMQ RFCQQCSRFH PLTEFDEGKR SCRRRLAGHN RRRRKTQTED  240
VSSSMLLPAN HDTSGNGDLD IVNLLTVLAH AQGNKEVKSS NGSSLPNKDQ LIQILSKINS  300
LPLPVEFEAK LPPVSGSSSR MTIPEQASSD NQSSRLNGNT TSPSTKDLLT VLSTTLAESS  360
PDALAILSQR SSQGADVDET KLACLDQALS LNMLKGASLE FPSVGGERSS TSSQSPVDYS  420
DSQIQETRAH LPLQLISSSP EDDSLPKLAS ARKYFSSTSS NPTDETSPLS SPPVVQKLFP  480
MQTTRETEPA RITTNGEVNK NVETSNARGC VTSLELFGRS NISANNGSFK SFPYKAGYTS  540
SSGSDQSPSS SNSDAQDRTG RIIFKLFGKN PSQFPESLRT EIYNWLSHSP SEMESYIRPG  600
CVVLSIYLSM PSSAWGQLEE NLLRHINSLI RDSDTDFWRD GRFLVHTGRR LASYKDGETC  660
HCKSWKAWRS PELISVSPLA IVGGEETSLF LRGRNLNIPG TKIHCTHMGG YLSKEVPGSS  720
GRETLYGEIS VVNFKVHGVA PGVLGRCFIE VENGFKGTSF PVIIADATIC QELRLLESEF  780
NEGAKVYDTI SEDQIHDLGK PRSKEEVLHF LNELGWLFQR KRNSSAIEVR DYTLARFKFL  840
FIFSVERDCC ALVKTLLDIL FERYLERVEP SRESLEMLSE IHLLNRAVKR RCRNMVDLLI  900
HYSVLSGNDT SKYIFPPNLV GPGGVTPLHQ AACTSSSDVM VDALTNDPQE IGLCCWTSLL  960
DANGLSPYAY ALTRNNHSYN RLVAHKLADR RNSQVSVSIG NEIDQQRLGA SLDHRQRSQF  1020
KQGPSSCSKC AVVASRYSRR MPGSRGFIHL PFMHSMLAIA AVCVCVCLFL RGRPDVGLVA  1080
PFEWESLGCG SS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	886	891	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein