PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028106666.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 471aa    MW: 52916.7 Da    PI: 5.9974
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028106666.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS462.72.2e-141464681374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lLl+ A++v++g+le+a+ +L ++s+lasp+gd+mqR+aayfteALa+r+++ +++lykal++++ s   +see+ ++klf+e++P+lk+++
  XP_028106666.1  46 LIHLLLASANHVATGSLENANITLDQISQLASPEGDTMQRIAAYFTEALAERILKGWPGLYKALHSTRIS--LVSEEILVRKLFFELFPFLKVAF 138
                     689*************************************************************999887..7********************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +++NqaI ea+ege++vHiiD+++ +++QW aL++ L++Rpegpp+lRiTgv++    +ke le++++ L++ A++l++pf+fn  v++++edl+
  XP_028106666.1 139 VITNQAIIEAMEGEKMVHIIDLNAAEPAQWGALIKDLSARPEGPPHLRITGVHQ----QKEVLEQMAHILTEEADRLDIPFQFNQ-VVSKVEDLD 228
                     ******************************************************....9**************************.799****** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrll......................................................desvsles..erdevLk 229
                     +e+Lrvk+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+
  XP_028106666.1 229 IEKLRVKTGEALAISSVLQLHTLLanndelrkksamtpnnangvnlqrtlqmnqrtlgellekdlvngysptshdsasSSPLSLNTsaRMDSFLN 323
                     ***************************************************************************99955555554558999*** PP

            GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                     ++++lsPkv+vv+eq+++hn+++++er+leal++y+alfd+le++lp++s er kvE++l+g+ei+++++ egaer++rhe+lekW +rle aGF
  XP_028106666.1 324 ALWGLSPKVMVVTEQDSNHNGSTLMERLLEALYFYAALFDCLESTLPKTSLERLKVEKMLFGEEIKDIITSEGAERKKRHEKLEKWIQRLELAGF 418
                     *********************************************************************************************** PP

            GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++vpls++a+ qa++ll+ ++ dgyr++ee+g++v +W+dr+L+svSaWr
  XP_028106666.1 419 GSVPLSYYAMLQARRLLQSYSCDGYRIKEENGCVVVCWQDRSLFSVSAWR 468
                     *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    
MFQDDGSSSI TSTPLQAFPI MSLSPGFGSA YPWLKELKSE DRGLYLIHLL LASANHVATG  60
SLENANITLD QISQLASPEG DTMQRIAAYF TEALAERILK GWPGLYKALH STRISLVSEE  120
ILVRKLFFEL FPFLKVAFVI TNQAIIEAME GEKMVHIIDL NAAEPAQWGA LIKDLSARPE  180
GPPHLRITGV HQQKEVLEQM AHILTEEADR LDIPFQFNQV VSKVEDLDIE KLRVKTGEAL  240
AISSVLQLHT LLANNDELRK KSAMTPNNAN GVNLQRTLQM NQRTLGELLE KDLVNGYSPT  300
SHDSASSSPL SLNTSARMDS FLNALWGLSP KVMVVTEQDS NHNGSTLMER LLEALYFYAA  360
LFDCLESTLP KTSLERLKVE KMLFGEEIKD IITSEGAERK KRHEKLEKWI QRLELAGFGS  420
VPLSYYAMLQ ARRLLQSYSC DGYRIKEENG CVVVCWQDRS LFSVSAWRCR R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein