PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028106096.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 167aa MW: 17358.3 Da PI: 7.6391 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 37 | 5.7e-12 | 38 | 60 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lC ++a++G Ck+G++CkF H+ XP_028106096.1 38 QLCTHYAQNGVCKFGSSCKFDHP 60 69********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence |
MKLFTQSWTP LHHPPEWSLP QMNFVLSPMG LSLRPGAQLC THYAQNGVCK FGSSCKFDHP 60 LGTLSYSSSA SSLADMPVAP YPVGSSMGTL APSSSSELRH ELILGSNKDA ISTRMSSSTS 120 TSSGSVGLIL SKSGPASHPS VQQSDQASAS SITSSSVSQG GEVHTSN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.2 | 1e-29 | C3H family protein |