PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028105772.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 687aa    MW: 77696.3 Da    PI: 6.5959
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028105772.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.43.9e-1123136832374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++c +a++  d + +++ L+r+++++s +gd ++Rla yf++AL+arla++++ ly a ++++ s    +++l++++++ +++P+ ++s+l
  XP_028105772.1 313 QTLLTQCSQAIARADIRSVNEQLNRIRQHSSAQGDGVERLAYYFANALEARLAGTGTALYVASSTKRIS---AADVLKSYQTYIKACPFNRMSNL 404
                     689***************************************************999999666666665...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN+ I++ +++++++H+iDf+i +G+QWp+L++ L++Rp+gpp+lRiTg++ p++g   +e++e+tg+rL+ ++++++v+fe+++ +ak++e++
  XP_028105772.1 405 YANRSIMKLAQTATTLHVIDFGILYGFQWPCLIHHLSARPGGPPKLRITGIDFPQPGfrPAERVEQTGRRLETYCKRFNVQFEYTA-IAKKWETI 498
                     ********************************************************9*****************************.7******* PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     el+eL+++++E+l+Vn+ ++l +++de+v  +++rd vL+lv++++P+++++   +  +n++ F++rf eal ++s++fd++ea++pre+ +r++
  XP_028105772.1 499 ELDELKIDRDEVLVVNCLFRLGNVPDETVLANNPRDIVLNLVQRIKPDMFIHGVVNGMYNAPFFVARFREALFHFSSIFDMFEATIPREDGDRVM 593
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +E+e+ gr+i+nv+aceg+er+er et+++W+ r  +aGFk++pl+++ +k + ++++ ++ + + v+e+ +++++gWk+r + ++S+W+
  XP_028105772.1 594 LEKEIYGRDIMNVIACEGTERVERPETYKQWQIRTLRAGFKQLPLNQDLVKLVTSMVKVHYHKDFVVDEDGNWMLQGWKGRIIHALSCWK 683
                     *************************************************************888*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    
MDFPFLSRAS KPIYKSDSSS SSDVNWVSHA SSEEGAFSDA TLKFINQMLM EEDDLEDKPC  60
MFRECLALQA TEKSFYDALG EKYPPPSSNA DHVFDLNPSP DDHSPDGESS DSPGSVNYFV  120
EPNWVRDQEK LERSSSHFGT TFEPISQSIS SSKSSGDGSV DTLVNQSQPF WLLSGGNTKV  180
AELVPNKKFV NYGLEMKEKN SKVAVQEEKN RRDHSPNGSR EKKTHHRGNG DNADDGRTNK  240
QLASYTDDSD EQLKMFDIVF LSSDLHQGSR LCLHHDDNDS AKKLQQNGPS KGSNGGKGHG  300
RKQGNKKEMV DLQTLLTQCS QAIARADIRS VNEQLNRIRQ HSSAQGDGVE RLAYYFANAL  360
EARLAGTGTA LYVASSTKRI SAADVLKSYQ TYIKACPFNR MSNLYANRSI MKLAQTATTL  420
HVIDFGILYG FQWPCLIHHL SARPGGPPKL RITGIDFPQP GFRPAERVEQ TGRRLETYCK  480
RFNVQFEYTA IAKKWETIEL DELKIDRDEV LVVNCLFRLG NVPDETVLAN NPRDIVLNLV  540
QRIKPDMFIH GVVNGMYNAP FFVARFREAL FHFSSIFDMF EATIPREDGD RVMLEKEIYG  600
RDIMNVIACE GTERVERPET YKQWQIRTLR AGFKQLPLNQ DLVKLVTSMV KVHYHKDFVV  660
DEDGNWMLQG WKGRIIHALS CWKPIED
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-177GRAS family protein