PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028105105.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family ARF
Protein Properties Length: 820aa    MW: 91590.7 Da    PI: 6.2086
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028105105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3741.7e-23127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae+       +++++++ +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++
  XP_028105105.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQQPPCQ-ELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEK 218
                     99*****************************86666675.9************************************************..8899 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l+++++r+
  XP_028105105.1 219 NQLLLGIRRA 228
                     999****997 PP
2Auxin_resp118.36.1e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaast+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp+rW nS+Wrs+k
  XP_028105105.1 253 AAHAASTNSCFTIFYNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPIRWANSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 820 aa     Download sequence    
MKLSTSGLSQ QAHEGENKCL NSELWHACAG PLVSLPTVGS RVVYFPQGHS EQVAATTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTPQEQKDT YIPVELGIPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPCQELIAR DLHDVEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL  240
SSDSMHIGLL AAAAHAASTN SCFTIFYNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIG DLDPIRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSLFP LRLKRPWYPG ASSFQDGREG AVNGMTWLRG ETGEQGLHSL NFQNVGMFPW  420
TQQRVDTTFA RNDLNQQYQA MLAAGLQNIG GGDSLKQQFL QLQQPFQYFQ HSGSQNPLLQ  480
QHQVIQPSIS SHILQAQTQM LPENLPRHMQ QQVNNQSEEQ PQQHTYQDPF LIQSDQLQQR  540
QQSNVPSHSF SKIDFADSNA KFSTSVTPCI QNMLGSLSTD GSANLFNFSS TGQSMVSEPS  600
QQPWVSKFTH SQVNPSANSV SLTPYPGKDT AVEQENCSLD GQNHALFGAN IDPGLLLPTT  660
LSSIGTSSVN ADVSSMPLGA SGFQSSLYGC MQDSSELLHS AAQVDPPTAN RTFVKVYKSG  720
SVGRSLDISR FSSYNELREE LGQMFGIEGL LKDPQRSGWQ LVFVDREDDV LLLGDGPWEA  780
FVNNVWYIKI LSPEDVLKLG KQEVESFSHN TGERDEYQWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.10.0ARF family protein