PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028105064.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family MIKC_MADS
Protein Properties Length: 235aa    MW: 27079 Da    PI: 9.719
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028105064.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.7e-271059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n++ rqvtfskRrng+lKKA+EL +LCdaev v++fsstgkly++ss
  XP_028105064.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMVFSSTGKLYDFSS 59
                    8***********************************************96 PP

2K-box88.81e-29821701098
           K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       ++ + +q+e+a L+++++nLq+++R+++Ge+L+ L++keLq+Le+qLe slk +R kK+++l+++i+el +k + +++en +L kk+
  XP_028105064.1  82 PCSEVKFWQREAAMLRQQLQNLQENHRQMMGEELSGLNVKELQNLENQLEMSLKGVRMKKDQILVDEIQELNRKGNLIHQENVELYKKV 170
                     446789********************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGVMVFSS TGKLYDFSSS  60
SMKTIIERYN KSKVEHNQLA NPCSEVKFWQ REAAMLRQQL QNLQENHRQM MGEELSGLNV  120
KELQNLENQL EMSLKGVRMK KDQILVDEIQ ELNRKGNLIH QENVELYKKV NLIREENMEL  180
YKKVYGTRDV NGANRNALLS NSLSLGDDSH APVHLQLCQP QQQNYEPPSR GLQLH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.11e-108MIKC_MADS family protein