PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028105045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 179aa MW: 20367.9 Da PI: 8.0449 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55.4 | 1e-17 | 101 | 153 | 2 | 54 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ +++k+q +Lee F+ +++++ +++ LAk+lg+ rqV vWFqNrRa+ XP_028105045.1 101 RKKLRLSKDQSMILEESFKVHNTLNPKQKLALAKRLGVRPRQVEVWFQNRRAR 153 788899**********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 81.7 | 1.1e-26 | 101 | 155 | 1 | 55 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtk 55 +kk+rlsk+q+ +LEesF+ +++L+p++K +la++Lg++prqv+vWFqnrRAR XP_028105045.1 101 RKKLRLSKDQSMILEESFKVHNTLNPKQKLALAKRLGVRPRQVEVWFQNRRARLE 155 69***************************************************75 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 179 aa Download sequence |
YSKIPPKISQ KKNFPSFDRN SETCRVETRS LLKGIDVNRV PSTIDCEEEA GVSSPNSTIS 60 SISGKRSERE EPNGEDLDLD LDLERASSRG ISDEEDGDTS RKKLRLSKDQ SMILEESFKV 120 HNTLNPKQKL ALAKRLGVRP RQVEVWFQNR RARLELCLFF NGVFDILSRV KVQELQSGE |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 100 | 106 | SRKKLRL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16780.1 | 7e-46 | HD-ZIP family protein |