PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028103935.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 448aa MW: 48220.4 Da PI: 7.8787

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028103935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.1	2.5e-12	43	68	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_028103935.1 43 DEADCIYYLRTGFCGYGSRCRFNHPR 68 6799********************96 PP
2	zf-CCCH	38.1	2.7e-12	90	114	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rtG Ck+G++Ck++H++ XP_028103935.1 90 QPICQYYMRTGMCKFGASCKYHHPR 114 799********************96 PP
3	zf-CCCH	35.4	1.9e-11	135	160	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H+p XP_028103935.1 135 GEKECSYYVKTGQCKFGVTCKFHHPP 160 7899********************97 PP
4	zf-CCCH	38.3	2.2e-12	300	325	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++C+++H+p XP_028103935.1 300 DQPECQYYMKTGHCKFGSSCRYHHPP 325 689*********************97 PP
5	zf-CCCH	35	2.4e-11	347	371	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +lC ++a++G C++G++CkF H++ XP_028103935.1 347 APLCTHYAQNGVCRFGPSCKFDHPM 371 68*********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MERYSQSDPA PEWRSPGDET GLQEPMWQLG LGGGEESYPE RPDEADCIYY LRTGFCGYGS 60 RCRFNHPRDR GSAVGALRTG GGEHPERVGQ PICQYYMRTG MCKFGASCKY HHPRQGSGSA 120 IHVAVNMFGY PLRPGEKECS YYVKTGQCKF GVTCKFHHPP PAGIQVPAPT AGPLPVPPPV 180 PAPGIYPSMP SPSVPSSQPY GMVTGNWQVA RPTLVPGFQG AYSHVLLPPG MVPLSGWNPY 240 QVSAVPSPST QSTVGAAPVY GMTQLSPSAP AYTGGYLPYP SPAGPSNNSQ KEHTFPERPD 300 QPECQYYMKT GHCKFGSSCR YHHPPEWSTP KINFALSPMG LPLRPGAPLC THYAQNGVCR 360 FGPSCKFDHP MGTLSYSPST SSLADMPVAP YPVGSSKGTL APSSSSSELR PEFMSGSHKD 420 APALSTRMSS SMSSWLQEDA LACCTEIP

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MERYSQSDPA PEWRSPGDET GLQEPMWQLG LGGGEESYPE RPDEADCIYY LRTGFCGYGS  60
RCRFNHPRDR GSAVGALRTG GGEHPERVGQ PICQYYMRTG MCKFGASCKY HHPRQGSGSA  120
IHVAVNMFGY PLRPGEKECS YYVKTGQCKF GVTCKFHHPP PAGIQVPAPT AGPLPVPPPV  180
PAPGIYPSMP SPSVPSSQPY GMVTGNWQVA RPTLVPGFQG AYSHVLLPPG MVPLSGWNPY  240
QVSAVPSPST QSTVGAAPVY GMTQLSPSAP AYTGGYLPYP SPAGPSNNSQ KEHTFPERPD  300
QPECQYYMKT GHCKFGSSCR YHHPPEWSTP KINFALSPMG LPLRPGAPLC THYAQNGVCR  360
FGPSCKFDHP MGTLSYSPST SSLADMPVAP YPVGSSKGTL APSSSSSELR PEFMSGSHKD  420
APALSTRMSS SMSSWLQEDA LACCTEIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-148	C3H family protein