PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028103273.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 546aa    MW: 60664.6 Da    PI: 5.3322
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028103273.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS449.71.8e-1371765461374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+e+L++cA+av+++dl ++++l+++l++++s  gdp+qRl ay++e+L arla+s+s++ykal+++e +   s+e l++++l++ev+P++kf++
  XP_028103273.1 176 LKEVLIACAKAVDDNDLLATEWLMSELRQMVSVCGDPFQRLGAYMLEGLVARLASSGSSIYKALKCKEPA---SAELLSYMHLLYEVCPYFKFGY 267
                     5789*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+r+HiiDf+isqG QW++L+qaLa+Rp+gpp++ iTg+++++s   +   +e +g+rL++fAe+++vpfef++ v  + + 
  XP_028103273.1 268 MSANGAIAEAMKDENRIHIIDFQISQGSQWVTLIQALAARPGGPPRICITGIDDSTSAyaRGGGIEIVGQRLSRFAESCNVPFEFHA-VPISASL 361
                     ******************************************************998899999************************.68899** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +e+++Lrv pgE laVn+++ lh+++desvs++++rd++L+lvkslsPk+v++veqe+++n+++F+ rfle l+yy a+f+s++++lpre++eri
  XP_028103273.1 362 VEIQDLRVLPGEPLAVNFAFVLHHMPDESVSVQNHRDRLLRLVKSLSPKIVTLVEQESNTNTAPFFPRFLEVLNYYKAIFESIDVTLPREHKERI 456
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+reivn++acegaer+erhe l+kWr+r+ +aGF+p+pl++ +++++k+ll++++++ yr+ee++ +l+lgW ++ Lv+ +aW+
  XP_028103273.1 457 NVEQHCLAREIVNIIACEGAERVERHELLGKWRSRFLMAGFTPYPLNSMVNATIKALLQNYNGN-YRLEERDRALYLGWVNQDLVASCAWK 546
                     **************************************************************77.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    
MQTSQKQGNS DGSHRLYYQP GPEVESYPWP PSQNLEHGLC SDDGSQGTHV SVQTSDQLGT  60
VDSSTATGGY PFQNSPSTVS FSPHGSPTSQ PDSHSYASDM HHSPDNTISS AISGICLTDD  120
VDDLRHKIRE LETAMLGPDS DILESCNIAI HGGPNQISLE TEKWKQVMEI ISKRDLKEVL  180
IACAKAVDDN DLLATEWLMS ELRQMVSVCG DPFQRLGAYM LEGLVARLAS SGSSIYKALK  240
CKEPASAELL SYMHLLYEVC PYFKFGYMSA NGAIAEAMKD ENRIHIIDFQ ISQGSQWVTL  300
IQALAARPGG PPRICITGID DSTSAYARGG GIEIVGQRLS RFAESCNVPF EFHAVPISAS  360
LVEIQDLRVL PGEPLAVNFA FVLHHMPDES VSVQNHRDRL LRLVKSLSPK IVTLVEQESN  420
TNTAPFFPRF LEVLNYYKAI FESIDVTLPR EHKERINVEQ HCLAREIVNI IACEGAERVE  480
RHELLGKWRS RFLMAGFTPY PLNSMVNATI KALLQNYNGN YRLEERDRAL YLGWVNQDLV  540
ASCAWK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein