PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028103201.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 112aa MW: 12970.2 Da PI: 10.7399 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.3 | 2.6e-20 | 9 | 53 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 kr e++sn+qvt+ +RrngilKKA+EL +LCd+++ +++f +tgk XP_028103201.1 9 KRLESTSNQQVTYLRRRNGILKKAKELFILCDIDIVLLMFCPTGK 53 689*****************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence |
MGRVKLKIKR LESTSNQQVT YLRRRNGILK KAKELFILCD IDIVLLMFCP TGKATLFRRE 60 RSNIQEVITK FAQLTPQERT KSSLESLEAP KKTFKKLDHD VNIQDFLGSS TQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18750.1 | 6e-59 | M-type_MADS family protein |