PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028102817.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24861.4 Da    PI: 10.1909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028102817.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.99.6e-221763349
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    ie k   qvtfskRr g++KKA+E ++LC++e+a+i+fs+ gk++ +
  XP_028102817.1 17 IEIKNHLQVTFSKRRSGLFKKASEFCTLCGIEIAIIVFSPAGKVFSF 63
                    7778888*************************************988 PP

Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MAKKPSMGRQ KIKIAKIEIK NHLQVTFSKR RSGLFKKASE FCTLCGIEIA IIVFSPAGKV  60
FSFGHPNVDS IVDQFLTRNP PPNTTTRHLI EAHRNASVRE LNLQLTQVLN ELEVEKRHGE  120
TLDHTRKVSQ RQYWWEAPID KLGLHELEQL RNSMIELKKN VTNQANKIQV ESTTNPLPFF  180
LVNGSGIVDP FESKTSHINA SSSVTPNVHN FGYYGHGFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-51M-type_MADS family protein