PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028102817.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 219aa MW: 24861.4 Da PI: 10.1909 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 67.9 | 9.6e-22 | 17 | 63 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ie k qvtfskRr g++KKA+E ++LC++e+a+i+fs+ gk++ + XP_028102817.1 17 IEIKNHLQVTFSKRRSGLFKKASEFCTLCGIEIAIIVFSPAGKVFSF 63 7778888*************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence |
MAKKPSMGRQ KIKIAKIEIK NHLQVTFSKR RSGLFKKASE FCTLCGIEIA IIVFSPAGKV 60 FSFGHPNVDS IVDQFLTRNP PPNTTTRHLI EAHRNASVRE LNLQLTQVLN ELEVEKRHGE 120 TLDHTRKVSQ RQYWWEAPID KLGLHELEQL RNSMIELKKN VTNQANKIQV ESTTNPLPFF 180 LVNGSGIVDP FESKTSHINA SSSVTPNVHN FGYYGHGFF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-51 | M-type_MADS family protein |