PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_028102803.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 238aa MW: 26600.4 Da PI: 10.243 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 191.6 | 1.2e-59 | 62 | 198 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalk 95 s+yk+kaa++ +v+ptf++l sg+lk++r+G+++l++ +a++erkydWek+q falsatev++l++l+sk+sceffhdp++ +sn+G+vrk+l+ XP_028102803.1 62 SIYKGKAAFSATPVLPTFSKLGSGSLKVDRRGSIMLKFWPAIGERKYDWEKRQLFALSATEVGSLISLGSKDSCEFFHDPSMLSSNAGQVRKTLS 156 7********************************************************************************************** PP Whirly 96 vePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 v+P G+f++lsv n+++k+n++fsvPv+ aefav+r++++ XP_028102803.1 157 VKPND--NGYFISLSVVNNILKTNDRFSVPVTTAEFAVMRTAFS 198 **976..58********************************995 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 238 aa Download sequence |
MSKLSSSLFH FRNQLSQRNL SAKDVRDALP LQGFMSRAFI STARETFSAD GKFADRIIAP 60 YSIYKGKAAF SATPVLPTFS KLGSGSLKVD RRGSIMLKFW PAIGERKYDW EKRQLFALSA 120 TEVGSLISLG SKDSCEFFHD PSMLSSNAGQ VRKTLSVKPN DNGYFISLSV VNNILKTNDR 180 FSVPVTTAEF AVMRTAFSFA LPHLMGWDRY THQLPQSMYE NPSSAKVVSP LLDSEWDK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 2e-89 | Whirly family protein |