PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028102409.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 481aa MW: 50975.2 Da PI: 7.9234 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38 | 2.7e-12 | 44 | 69 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_028102409.1 44 DEADCIYYLRTGFCGYGSRCRFNHPR 69 6799********************96 PP | |||||||
2 | zf-CCCH | 38.5 | 2e-12 | 91 | 115 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtG Ck+G++Ck++H++ XP_028102409.1 91 EPVCQYYMRTGMCKFGASCKYHHPQ 115 789********************97 PP | |||||||
3 | zf-CCCH | 32.7 | 1.3e-10 | 136 | 160 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+++ +tG+Ck+G +CkF+H+ XP_028102409.1 136 GEKECSYYVKTGQCKFGVTCKFHHP 160 7899********************8 PP | |||||||
4 | zf-CCCH | 34 | 5e-11 | 303 | 328 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C+++ +tG Ck+G++C+++H+ XP_028102409.1 303 PGQPECQYYIKTGNCKFGSSCRYHHP 328 5789*********************9 PP | |||||||
5 | zf-CCCH | 35 | 2.3e-11 | 352 | 374 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 lC ++a++G Ck+G++CkF H+ XP_028102409.1 352 QLCTHYAQNGVCKFGSSCKFDHP 374 69********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 481 aa Download sequence |
MERYGRATAM EGSQSDPGGE TGLEEPMWQL GFGSGVESYP ERPDEADCIY YLRTGFCGYG 60 SRCRFNHPRD RGSVVGVMRA GGGEFPERVG EPVCQYYMRT GMCKFGASCK YHHPQQGGGS 120 AIPMTLNIYG YPFRPGEKEC SYYVKTGQCK FGVTCKFHHP HPAGIQMPAP NAGPLPMPAP 180 VPAAIYPSIQ SPSAPSSQQY GVVAGNWPVA RPTLVQGSYL QGAYSPVLLS TGMVPFSGWN 240 PYQASVNPVA SPSSQSTIGA SPIYGLTQLS PSAPAYAGAY LPLHASAGPS SSNQREYAFP 300 ERPGQPECQY YIKTGNCKFG SSCRYHHPLE WSLPQMNFVL SPMGLPLRPG AQLCTHYAQN 360 GVCKFGSSCK FDHPLGTLSY SSSASSLADM PVAPYPVGSS MGTLAPSSSS ELRHELILGS 420 NKDAISTRMS SSTSTSSGSV GLILSKSGPA SHPSVQQSDQ ASASSITSSS VSQGGEVHTS 480 I |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-153 | C3H family protein |