PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028102298.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family GRAS
Protein Properties Length: 451aa    MW: 50415.5 Da    PI: 5.4183
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028102298.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS304.32.9e-93554482373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetsekn.....sseelaalkl..fsevs 88 
                     ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL ar a+s+s ++  a++  +++  n     ++ ++    l  f++++
  XP_028102298.1  55 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALIARAAKSGScKMLTAVANANANA-NlaidtHKFSIIE--LasFVDLT 146
                     79****************************************************54413333333333333.2445223333333..366***** PP

            GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnv 180
                     P+++f++ +aN aIleaveg++ +H +D+++++++Q p+L++a+asR egpp +++T+ g+ e +      ++e +g +L +fA++ +v++ef+v
  XP_028102298.1 147 PWHRFGFTAANAAILEAVEGCSVIHMVDLSLTHCMQIPTLIDAIASRLEGPPLIKLTVAGATEDVppmLDLSYEDLGTKLVNFARSRNVSMEFRV 241
                     *************************************************************887798888899********************** PP

            GRAS 181 l...vakrledleleeLrvkp........gEalaVnlvlqlhrlldesvsles......erdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                     +    ++ +++l +e+Lr+ +         Eal++n++++lh++++e++++ +      +r+ +L+ +++l P++vv+v+++ad +s++++ r+ 
  XP_028102298.1 242 IpssSSDGFSSL-IEQLRIPQhlvksnnaTEALVINCHMMLHYIPEETLCSFEnpptssYRTMFLNSLRDLDPTIVVLVDEDADFTSNDLACRLR 335
                     966534455555.8888777777777889****************888754333444449*********************************** PP

            GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrvee 353
                     +a++y +  +d++++ lpres++r+++E   + ++++nv+ +eg +r+er e +++W +r+++a F+ v++se+a++++k++l +++  g+ ++ 
  XP_028102298.1 336 SAFNYLWIPYDTVDTFLPRESKQRQWYETD-ICWKVENVIGHEGVQRVERLEPKSRWVQRMRNACFRGVSYSEEAVSEVKSMLDEHA-AGWGLKR 428
                     ******************************.********************************************************.8999*** PP

            GRAS 354 esgslvlgWkdrpLvsvSaW 373
                     e++ lvl+Wk++++v+++aW
  XP_028102298.1 429 EEDDLVLTWKGHNVVFATAW 448
                     ******************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    
MMQFTETPPP TFHQISPFTS LLSMNKNQIH RTRPWPGFPT SKSALGSLGD ANCMEQLLVH  60
CANAIESNDA TLAQQILWVL NNIAPPDGDS NQRLTCGFLR ALIARAAKSG SCKMLTAVAN  120
ANANANLAID THKFSIIELA SFVDLTPWHR FGFTAANAAI LEAVEGCSVI HMVDLSLTHC  180
MQIPTLIDAI ASRLEGPPLI KLTVAGATED VPPMLDLSYE DLGTKLVNFA RSRNVSMEFR  240
VIPSSSSDGF SSLIEQLRIP QHLVKSNNAT EALVINCHMM LHYIPEETLC SFENPPTSSY  300
RTMFLNSLRD LDPTIVVLVD EDADFTSNDL ACRLRSAFNY LWIPYDTVDT FLPRESKQRQ  360
WYETDICWKV ENVIGHEGVQ RVERLEPKSR WVQRMRNACF RGVSYSEEAV SEVKSMLDEH  420
AAGWGLKREE DDLVLTWKGH NVVFATAWVP T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein