PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028101487.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 169aa MW: 19156.6 Da PI: 8.6684 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.9 | 7.4e-08 | 51 | 70 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C f+++ G C+yG++C++ H+ XP_028101487.1 51 CTFYQK-GVCSYGSQCRYEHV 70 999999.***********997 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MEPPLSLSLS KILSLAFSRT RAPSPSAASF ATTPFTATAT NTDDYDYLLM CTFYQKGVCS 60 YGSQCRYEHV KVFRSQSSTE LAWQSNSSTS GMDANFTLRA CPICRKVSYF VIPSVIWYST 120 KEEKQEIVDS YKAKHREAGN TSFLTYSLLY GENYLGSWRN YLKLDFAPR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 1e-22 | C3H family protein |