PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028101423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 357aa MW: 38726.6 Da PI: 8.8847 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.1 | 4.5e-11 | 11 | 35 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ XP_028101423.1 11 QPECQYYLKTATCKFGATCKFHHPR 35 799********************96 PP | |||||||
2 | zf-CCCH | 36.9 | 6e-12 | 57 | 81 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_028101423.1 57 ETECAYYLRTGQCKFGSTCKFHHPQ 81 578********************97 PP | |||||||
3 | zf-CCCH | 38.1 | 2.6e-12 | 217 | 243 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101423.1 217 PGQPDCQFYMKTGDCKFGAVCRFHHPR 243 5789*********************96 PP | |||||||
4 | zf-CCCH | 36.3 | 9.6e-12 | 264 | 289 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101423.1 264 GEPSCIFYSRYGICKFGPSCKFDHPM 289 7889********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 357 aa Download sequence |
MKGEFPERIG QPECQYYLKT ATCKFGATCK FHHPRDKAGI AGRVTLNILG YPHRPNETEC 60 AYYLRTGQCK FGSTCKFHHP QPSNMMVSLR GSPVYPTVHS PTTPGQQSYP GGITNWPLSR 120 ASFIPSPRWQ GPSSYAPLIL PQGVMSVPGY TYSGHPSSVS SSESQQQTAG NNQIYGTSRQ 180 SEAANSGSQG TLSPYRSGSV PVGYYALQRE NVFPERPGQP DCQFYMKTGD CKFGAVCRFH 240 HPRERLLPAP DCILSPIGLP LRPGEPSCIF YSRYGICKFG PSCKFDHPMG VFTYNLAASS 300 SPHAPVVRRL LGSSSGAGAL ALSSEGLVDA GSAKPRRLSL SESRQMPSGD DNIDTEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-133 | C3H family protein |