PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101421.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 413aa MW: 45454.5 Da PI: 8.7769

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.1	2.2e-11	61	86	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G+ C+F+H+p XP_028101421.1 61 GEPDCSYYIRTGLCRFGAACRFNHPP 86 6899********************97 PP
2	zf-CCCH	36.4	8.7e-12	114	137	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C +++rtG+Ck+G++CkF+H++ XP_028101421.1 114 TECAYYLRTGQCKFGSTCKFHHPQ 137 68********************97 PP
3	zf-CCCH	37.9	3.1e-12	273	299	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101421.1 273 PGQPDCQFYMKTGDCKFGAVCRFHHPR 299 5789*********************96 PP
4	zf-CCCH	36	1.2e-11	320	345	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101421.1 320 GEPSCIFYSRYGICKFGPSCKFDHPM 345 7889********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
MEVSLSWNST PEFRCPKPLS PTLLLPCLRL WMKVRFKYTL WQMNLRSSEI MESGPYPMRE 60 GEPDCSYYIR TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QNETECAYYL 120 RTGQCKFGST CKFHHPQPSN MMVSLRGSPV YPTVHSPTTP GQQSYPGGIT NWPLSRASFI 180 PSPRWQGPSS YAPLILPQGV MSVPGYTYSG HPSSVSSSES QQQTAGNNQI YGTSRQSEAA 240 NSGSQGTLSP YRSGSVPVGY YALQRENVFP ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE 300 RLLPAPDCIL SPIGLPLRPG EPSCIFYSRY GICKFGPSCK FDHPMGVFTY NLAASSSPHA 360 PVVRRLLGSS SGAGALALSS EGLVDAGSAK PRRLSLSESR QMPSGDDNID TEG

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

MEVSLSWNST PEFRCPKPLS PTLLLPCLRL WMKVRFKYTL WQMNLRSSEI MESGPYPMRE  60
GEPDCSYYIR TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QNETECAYYL  120
RTGQCKFGST CKFHHPQPSN MMVSLRGSPV YPTVHSPTTP GQQSYPGGIT NWPLSRASFI  180
PSPRWQGPSS YAPLILPQGV MSVPGYTYSG HPSSVSSSES QQQTAGNNQI YGTSRQSEAA  240
NSGSQGTLSP YRSGSVPVGY YALQRENVFP ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE  300
RLLPAPDCIL SPIGLPLRPG EPSCIFYSRY GICKFGPSCK FDHPMGVFTY NLAASSSPHA  360
PVVRRLLGSS SGAGALALSS EGLVDAGSAK PRRLSLSESR QMPSGDDNID TEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-132	C3H family protein