PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028101420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 48263.4 Da PI: 8.4195 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35 | 2.4e-11 | 51 | 76 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C+++ rtG C++G+ C+F+H+p XP_028101420.1 51 GEPDCSYYIRTGLCRFGAACRFNHPP 76 6899********************97 PP | |||||||
2 | zf-CCCH | 33.8 | 5.8e-11 | 97 | 121 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++t tCk+G++CkF+H++ XP_028101420.1 97 QPECQYYLKTATCKFGATCKFHHPR 121 799********************96 PP | |||||||
3 | zf-CCCH | 36.6 | 7.8e-12 | 143 | 167 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C +++rtG+Ck+G++CkF+H++ XP_028101420.1 143 ETECAYYLRTGQCKFGSTCKFHHPQ 167 578********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.3e-12 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG Ck+G+ C+F+H++ XP_028101420.1 303 PGQPDCQFYMKTGDCKFGAVCRFHHPR 329 5789*********************96 PP | |||||||
5 | zf-CCCH | 35.9 | 1.3e-11 | 350 | 375 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C f++r+G+Ck+G++CkF H++ XP_028101420.1 350 GEPSCIFYSRYGICKFGPSCKFDHPM 375 7889********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 443 aa Download sequence |
MEFDAGIPMS QAAVTDAPSS LSPPLDEDTL WQMNLRSSEI MESGPYPMRE GEPDCSYYIR 60 TGLCRFGAAC RFNHPPNRKL AIATSRMKGE FPERIGQPEC QYYLKTATCK FGATCKFHHP 120 RDKAGIAGRV TLNILGYPHR PNETECAYYL RTGQCKFGST CKFHHPQPSN MMVSLRGSPV 180 YPTVHSPTTP GQQSYPGGIT NWPLSRASFI PSPRWQGPSS YAPLILPQGV MSVPGYTYSG 240 HPSSVSSSES QQQTAGNNQI YGTSRQSEAA NSGSQGTLSP YRSGSVPVGY YALQRENVFP 300 ERPGQPDCQF YMKTGDCKFG AVCRFHHPRE RLLPAPDCIL SPIGLPLRPG EPSCIFYSRY 360 GICKFGPSCK FDHPMGVFTY NLAASSSPHA PVVRRLLGSS SGAGALALSS EGLVDAGSAK 420 PRRLSLSESR QMPSGDDNID TEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-176 | C3H family protein |