PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028101008.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 396aa MW: 43857.4 Da PI: 8.9626

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028101008.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.00011	84	104	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H XP_028101008.1 84 CEICNKGFQRDQNLQLHRRGH 104 *******************88 PP
2	zf-C2H2	12.3	0.00052	157	179	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H + + XP_028101008.1 157 WKCEKCSKHYAVQSDWKAHSKIC 179 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MMNSMRVDDN LSNLISASNK ASISSSHRNE VGSSTVYPDQ QSFASPNQPP PPKKRRNLPG 60 NPDPDAAVVA LSPSTLMATN RFLCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVKK 120 VYVCPEATCV HHEPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKHYAVQS DWKAHSKICG 180 TREYRCDCGT LFSRKDTFVT HRAFCDALSQ ETSRGGITSS IPFLSSQTPL STSTTSHLNP 240 FPLKTEQDHH HHQSFHLRPS HLPPWLNHSF IYHENPNPNP SQTLIPTLPS FQPTASPHMS 300 ATALLQKAAQ MSVTMSQPCL SSGGCMEQVG NVNMMNSLLP CGSVFEGSSS SSSFEKALNG 360 MLNPKVDSNI QETLTKQTME DGDSGGNGLT RDFFGS

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MMNSMRVDDN LSNLISASNK ASISSSHRNE VGSSTVYPDQ QSFASPNQPP PPKKRRNLPG  60
NPDPDAAVVA LSPSTLMATN RFLCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKEVKK  120
VYVCPEATCV HHEPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKHYAVQS DWKAHSKICG  180
TREYRCDCGT LFSRKDTFVT HRAFCDALSQ ETSRGGITSS IPFLSSQTPL STSTTSHLNP  240
FPLKTEQDHH HHQSFHLRPS HLPPWLNHSF IYHENPNPNP SQTLIPTLPS FQPTASPHMS  300
ATALLQKAAQ MSVTMSQPCL SSGGCMEQVG NVNMMNSLLP CGSVFEGSSS SSSFEKALNG  360
MLNPKVDSNI QETLTKQTME DGDSGGNGLT RDFFGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-103	C2H2 family protein