PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028100835.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family M-type_MADS
Protein Properties Length: 311aa    MW: 36010.4 Da    PI: 9.7053
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028100835.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.97.2e-20154198145
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 
                     kr e++sn+qvt+ +RrngilKKA+EL +LCd+++a+++fs+ gk
  XP_028100835.1 154 KRLESTSNQQVTYLRRRNGILKKAKELFILCDIDIALLMFSPIGK 198
                     689**************************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MEFSSLKVPT GECISPTMAL KRCIEEELAK FKADGSSAID GRLFVPRHSD KQEYVLGSPQ  60
EESPKRAEAL AILKDKHQHK KKRKLILTPE ESEPHIEEKR RQQQLLRDEA AATDTIQRET  120
ARRQHTVEHY SLRSSPIIAT TSETTTGRVK LKTKRLESTS NQQVTYLRRR NGILKKAKEL  180
FILCDIDIAL LMFSPIGKPT LFRRERSNIE EVITKSAQLT PQERTKSSLE SLEAPKKTFK  240
KLDHDVNIQD FLGSRCFEFE FLFIARIPMN FFDISYLNCY GQELSNQLRM MRAQLTEAHK  300
RLRCNFEAHI C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085KKKRKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.13e-56M-type_MADS family protein