PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028100320.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 549aa MW: 61446.4 Da PI: 6.4725

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028100320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.9	6.4e-10	293	336	3	44
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT e d+ + +a + + + +W+++a++++ g+t +++k+++ XP_028100320.1 293 SWTREQDKAFENALAIFSEEssdRWEKVAAMVP-GKTVEEIKHHY 336 7***************99*********.********9 PP
2	Myb_DNA-binding	42.2	1.9e-13	400	444	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + +++G+g+Wk I+r + Rt+ q+ s+ qky XP_028100320.1 400 AWTEEEHRLFLLGLEKYGKGDWKGISRNFVVSRTPTQVASHAQKY 444 6*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence
MPTRILNFKT PLQVFTNCHP TSRLSSPLPL KNFGCTVFVH IPNHNRGKLD PRPRKCVFVG 60 YAPAQKGYKC FDPISKKLFV TMDVTFFESK PFFVTHLRGE SAREDSDSDM FKIERTPTRN 120 PNNLLEPSSS NQFVHPNIET LGLDITSDTS FEKPAEIEIL NQKNDVLNIE SLDGSSFLPS 180 HNQNHSNIDN RNKTSTKNLE PLTYSRRKHN SKESNPDPLQ GHEYELREEP NSSECPEMAA 240 VEADDEEDLL AFEKKNLSPL QQVSILSTEI SRKPFRTDPY QRMSTNGTGS SSSWTREQDK 300 AFENALAIFS EESSDRWEKV AAMVPGKTVE EIKHHYEILV EDINAIESDL VPLPHYKDSA 360 SRAGDFGVGE EGSQFGQMQS DSRHGGKSSR SDQERRRGIA WTEEEHRLFL LGLEKYGKGD 420 WKGISRNFVV SRTPTQVASH AQKYFIRQSS ANRERRRTSI HDITSVCGGD TSSTPQGQIT 480 GQVDGVATMA KPTLSDPHLI SAVGVPVDHP SLAEMLSDVR APTPGSLVSG TSKDMPPMTY 540 LQPHSSDQK

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence

MPTRILNFKT PLQVFTNCHP TSRLSSPLPL KNFGCTVFVH IPNHNRGKLD PRPRKCVFVG  60
YAPAQKGYKC FDPISKKLFV TMDVTFFESK PFFVTHLRGE SAREDSDSDM FKIERTPTRN  120
PNNLLEPSSS NQFVHPNIET LGLDITSDTS FEKPAEIEIL NQKNDVLNIE SLDGSSFLPS  180
HNQNHSNIDN RNKTSTKNLE PLTYSRRKHN SKESNPDPLQ GHEYELREEP NSSECPEMAA  240
VEADDEEDLL AFEKKNLSPL QQVSILSTEI SRKPFRTDPY QRMSTNGTGS SSSWTREQDK  300
AFENALAIFS EESSDRWEKV AAMVPGKTVE EIKHHYEILV EDINAIESDL VPLPHYKDSA  360
SRAGDFGVGE EGSQFGQMQS DSRHGGKSSR SDQERRRGIA WTEEEHRLFL LGLEKYGKGD  420
WKGISRNFVV SRTPTQVASH AQKYFIRQSS ANRERRRTSI HDITSVCGGD TSSTPQGQIT  480
GQVDGVATMA KPTLSDPHLI SAVGVPVDHP SLAEMLSDVR APTPGSLVSG TSKDMPPMTY  540
LQPHSSDQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	4e-81	MYB family protein