PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028100189.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 22789.8 Da PI: 4.6655 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 138.2 | 2.9e-43 | 57 | 156 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp ++p +f ++h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+aela XP_028100189.1 57 PCAACKILRRRCAEKCVLAPYFPPTDPLRFTIAHRVFGASNIIKLLQELPESQRADAVSSMVYEANARIRDPVYGCAGAIFQLQKQVSELQAELA 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_028100189.1 152 KTQAE 156 99976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MECSDRTTTI TVSTSSFFTP SSSPPRSTSS SPTQSSGGGG GGAPPSPPPP AVVVMSPCAA 60 CKILRRRCAE KCVLAPYFPP TDPLRFTIAH RVFGASNIIK LLQELPESQR ADAVSSMVYE 120 ANARIRDPVY GCAGAIFQLQ KQVSELQAEL AKTQAEVVNM QCQQANLVAL LCMEMSQSEE 180 PIFQHEQALY DDNASLSLDD GSFAPAWETL WA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-72 | LBD family protein |