PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098954.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

NF-YC

Protein Properties

Length: 277aa MW: 31021.2 Da PI: 6.8609

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098954.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	177.9	9.6e-56	96	199	1	101
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql+sfw++q iek+tdfknh+lPlarikki+kadedv+misaeaP+++++ace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdfl XP_028098954.1 96 QLQSFWANQyqeIEKVTDFKNHNLPLARIKKIMKADEDVRMISAEAPIVFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFL 190 89****99999****************************************************************************** PP NF-YC 93 vdivprdel 101 vdivpr++l XP_028098954.1 191 VDIVPREDL 199 ****987 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MVAVVRLWLQ GCKGHSVTIA DRMDQQGHGQ PQGAQLHYGT SQFEPNQVGG TPNRGPVVTS 60 VGPTQSPSQP GGAQLAQHQL AYQHIHQQQQ QLLQQQLQSF WANQYQEIEK VTDFKNHNLP 120 LARIKKIMKA DEDVRMISAE APIVFARACE MFILELTLRS WNHTEENKRR TLQKNDIAAA 180 ITRTDIFDFL VDIVPREDLK DEALASIPRG TMPVGGPADA YPYYYMPPQH SPQAGTPGMI 240 MGKPVLDPVM YAQQPHPYMA PQMWPQAPQQ PQSPTDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	175	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08970.3	5e-76	NF-YC family protein