PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098792.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1049aa MW: 116526 Da PI: 7.6333

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098792.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.5	3.4e-37	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hsk++++lv ++ qrfCqqCsrfh+lsefDe+krsC +rLa+h +rrrk+q+ XP_028098792.1 154 VCQVDNCREDLSKAKDYHRRHKVCEIHSKSSTALVGKQIQRFCQQCSRFHHLSEFDEGKRSCGHRLAGHSRRRRKTQT 231 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence
MEEVGAQISP SIFIHQPLPA QFCEGHPNPM AKKRNLSFQV QQQLASGFQI PGNIWKPKDW 60 DWDCVRFAAK PLESDVLHLG TSQLIQSEQH KIGRESSGIS TLLEKNPVDQ DNEILQLQLG 120 GSSNSLQECV SRPNKRVRSG SPGGGGSGNG SYPVCQVDNC REDLSKAKDY HRRHKVCEIH 180 SKSSTALVGK QIQRFCQQCS RFHHLSEFDE GKRSCGHRLA GHSRRRRKTQ TEDVSSRMLL 240 PGSHDNAGNG DLDIVNLLTV LARAQGNEEV NSPNCSSVPN KDQLIQILNY QNKLNRNMSS 300 ASTKDLLAVL SATLAASTPD ALAILSQRSS QGVEADKTKL ACLEQALSLY MQRGTAFEFP 360 SVGGESSNTS YQYPVEDSDC QVQEIRANLP LQLFSSSPEG DSLPKLTSAR KYFSSGSSNP 420 MEETSPSSSP SVVQKLFPRQ TTRETELERI SAIQEVKENV EISAAHGCVT SLELFGGSNR 480 GADSGSFQTL PYQAGYTSSS GSDHSPSSLN SEAQVDRTGR IIFKLFGKDP SQLPGTLRTQ 540 VYNWLSHSPS EMESYIRPGC VVLSIYISMS SSSWEQLEGN LLQHVNSLVW DSATDFWRNG 600 RFLVHTGRQL ACHKDGKIRL CKSWTAWRPP ELISVSPLAV VGGQETSLFL RGRNLNIPGT 660 KIHCTHGYLS KEVPGSACQE TIYDERSLVR FKINGVSPAV LGRCFIEVEN GFKGTSFPVI 720 IADANICQEL RLLESELDEA AKIHDTISEN QICNFGRPGS KEEVLHFLNE LGWLFQRKRN 780 SSTIEVPDYT LTRFKFLFIF TVERDFCALV RTLLDMLLQR DLDRGEPSRE SLEILSEICL 840 LNRAVKRRCR NMVELLIHYS VLSGNDTFKY IFPPNLVGPG CITPLHLAAC TSSSDDIVDA 900 LTSDPQEIGL HCWNSLLDAN GLSPYAYALM RNNHSSNRLV THKLADRKNG QVSVSIGNEI 960 EQQCLRVNWE HQQRSQFKRG QRSCSNCAVV ATRYNSRIAV SQGLLHRPYM HSILAIAAVC 1020 VCVCLFMRGH PNVNLVNPFK WENLGYGPM

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence

MEEVGAQISP SIFIHQPLPA QFCEGHPNPM AKKRNLSFQV QQQLASGFQI PGNIWKPKDW  60
DWDCVRFAAK PLESDVLHLG TSQLIQSEQH KIGRESSGIS TLLEKNPVDQ DNEILQLQLG  120
GSSNSLQECV SRPNKRVRSG SPGGGGSGNG SYPVCQVDNC REDLSKAKDY HRRHKVCEIH  180
SKSSTALVGK QIQRFCQQCS RFHHLSEFDE GKRSCGHRLA GHSRRRRKTQ TEDVSSRMLL  240
PGSHDNAGNG DLDIVNLLTV LARAQGNEEV NSPNCSSVPN KDQLIQILNY QNKLNRNMSS  300
ASTKDLLAVL SATLAASTPD ALAILSQRSS QGVEADKTKL ACLEQALSLY MQRGTAFEFP  360
SVGGESSNTS YQYPVEDSDC QVQEIRANLP LQLFSSSPEG DSLPKLTSAR KYFSSGSSNP  420
MEETSPSSSP SVVQKLFPRQ TTRETELERI SAIQEVKENV EISAAHGCVT SLELFGGSNR  480
GADSGSFQTL PYQAGYTSSS GSDHSPSSLN SEAQVDRTGR IIFKLFGKDP SQLPGTLRTQ  540
VYNWLSHSPS EMESYIRPGC VVLSIYISMS SSSWEQLEGN LLQHVNSLVW DSATDFWRNG  600
RFLVHTGRQL ACHKDGKIRL CKSWTAWRPP ELISVSPLAV VGGQETSLFL RGRNLNIPGT  660
KIHCTHGYLS KEVPGSACQE TIYDERSLVR FKINGVSPAV LGRCFIEVEN GFKGTSFPVI  720
IADANICQEL RLLESELDEA AKIHDTISEN QICNFGRPGS KEEVLHFLNE LGWLFQRKRN  780
SSTIEVPDYT LTRFKFLFIF TVERDFCALV RTLLDMLLQR DLDRGEPSRE SLEILSEICL  840
LNRAVKRRCR NMVELLIHYS VLSGNDTFKY IFPPNLVGPG CITPLHLAAC TSSSDDIVDA  900
LTSDPQEIGL HCWNSLLDAN GLSPYAYALM RNNHSSNRLV THKLADRKNG QVSVSIGNEI  960
EQQCLRVNWE HQQRSQFKRG QRSCSNCAVV ATRYNSRIAV SQGLLHRPYM HSILAIAAVC  1020
VCVCLFMRGH PNVNLVNPFK WENLGYGPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	843	848	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein