PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098791.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1080aa MW: 119931 Da PI: 7.3971

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098791.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.4	3.5e-37	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hsk++++lv ++ qrfCqqCsrfh+lsefDe+krsC +rLa+h +rrrk+q+ XP_028098791.1 154 VCQVDNCREDLSKAKDYHRRHKVCEIHSKSSTALVGKQIQRFCQQCSRFHHLSEFDEGKRSCGHRLAGHSRRRRKTQT 231 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1080 aa Download sequence
MEEVGAQISP SIFIHQPLPA QFCEGHPNPM AKKRNLSFQV QQQLASGFQI PGNIWKPKDW 60 DWDCVRFAAK PLESDVLHLG TSQLIQSEQH KIGRESSGIS TLLEKNPVDQ DNEILQLQLG 120 GSSNSLQECV SRPNKRVRSG SPGGGGSGNG SYPVCQVDNC REDLSKAKDY HRRHKVCEIH 180 SKSSTALVGK QIQRFCQQCS RFHHLSEFDE GKRSCGHRLA GHSRRRRKTQ TEDVSSRMLL 240 PGSHDNAGNG DLDIVNLLTV LARAQGNEEV NSPNCSSVPN KDQLIQILSK MNLLPLPVDF 300 ETKLPVSESL TSTVPEQSFS DYQNKLNRNM SSASTKDLLA VLSATLAAST PDALAILSQR 360 SSQGVEADKT KLACLEQALS LYMQRGTAFE FPSVGGESSN TSYQYPVEDS DCQVQEIRAN 420 LPLQLFSSSP EGDSLPKLTS ARKYFSSGSS NPMEETSPSS SPSVVQKLFP RQTTRETELE 480 RISAIQEVKE NVEISAAHGC VTSLELFGGS NRGADSGSFQ TLPYQAGYTS SSGSDHSPSS 540 LNSEAQDRTG RIIFKLFGKD PSQLPGTLRT QVYNWLSHSP SEMESYIRPG CVVLSIYISM 600 SSSSWEQLEG NLLQHVNSLV WDSATDFWRN GRFLVHTGRQ LACHKDGKIR LCKSWTAWRP 660 PELISVSPLA VVGGQETSLF LRGRNLNIPG TKIHCTHGYL SKEVPGSACQ ETIYDERSLV 720 RFKINGVSPA VLGRCFIEVE NGFKGTSFPV IIADANICQE LRLLESELDE AAKIHDTISE 780 NQICNFGRPG SKEEVLHFLN ELGWLFQRKR NSSTIEVPDY TLTRFKFLFI FTVERDFCAL 840 VRTLLDMLLQ RDLDRGEPSR ESLEILSEIC LLNRAVKRRC RNMVELLIHY SVLSGNDTFK 900 YIFPPNLVGP GCITPLHLAA CTSSSDDIVD ALTSDPQEIG LHCWNSLLDA NGLSPYAYAL 960 MRNNHSSNRL VTHKLADRKN GQVSVSIGNE IEQQCLRVNW EHQQRSQFKR GQRSCSNCAV 1020 VATRYNSRIA VSQGLLHRPY MHSILAIAAV CVCVCLFMRG HPNVNLVNPF KWENLGYGPM

Sequence ? help Back to Top

Protein Sequence Length: 1080 aa Download sequence

MEEVGAQISP SIFIHQPLPA QFCEGHPNPM AKKRNLSFQV QQQLASGFQI PGNIWKPKDW  60
DWDCVRFAAK PLESDVLHLG TSQLIQSEQH KIGRESSGIS TLLEKNPVDQ DNEILQLQLG  120
GSSNSLQECV SRPNKRVRSG SPGGGGSGNG SYPVCQVDNC REDLSKAKDY HRRHKVCEIH  180
SKSSTALVGK QIQRFCQQCS RFHHLSEFDE GKRSCGHRLA GHSRRRRKTQ TEDVSSRMLL  240
PGSHDNAGNG DLDIVNLLTV LARAQGNEEV NSPNCSSVPN KDQLIQILSK MNLLPLPVDF  300
ETKLPVSESL TSTVPEQSFS DYQNKLNRNM SSASTKDLLA VLSATLAAST PDALAILSQR  360
SSQGVEADKT KLACLEQALS LYMQRGTAFE FPSVGGESSN TSYQYPVEDS DCQVQEIRAN  420
LPLQLFSSSP EGDSLPKLTS ARKYFSSGSS NPMEETSPSS SPSVVQKLFP RQTTRETELE  480
RISAIQEVKE NVEISAAHGC VTSLELFGGS NRGADSGSFQ TLPYQAGYTS SSGSDHSPSS  540
LNSEAQDRTG RIIFKLFGKD PSQLPGTLRT QVYNWLSHSP SEMESYIRPG CVVLSIYISM  600
SSSSWEQLEG NLLQHVNSLV WDSATDFWRN GRFLVHTGRQ LACHKDGKIR LCKSWTAWRP  660
PELISVSPLA VVGGQETSLF LRGRNLNIPG TKIHCTHGYL SKEVPGSACQ ETIYDERSLV  720
RFKINGVSPA VLGRCFIEVE NGFKGTSFPV IIADANICQE LRLLESELDE AAKIHDTISE  780
NQICNFGRPG SKEEVLHFLN ELGWLFQRKR NSSTIEVPDY TLTRFKFLFI FTVERDFCAL  840
VRTLLDMLLQ RDLDRGEPSR ESLEILSEIC LLNRAVKRRC RNMVELLIHY SVLSGNDTFK  900
YIFPPNLVGP GCITPLHLAA CTSSSDDIVD ALTSDPQEIG LHCWNSLLDA NGLSPYAYAL  960
MRNNHSSNRL VTHKLADRKN GQVSVSIGNE IEQQCLRVNW EHQQRSQFKR GQRSCSNCAV  1020
VATRYNSRIA VSQGLLHRPY MHSILAIAAV CVCVCLFMRG HPNVNLVNPF KWENLGYGPM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	874	879	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein