PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098790.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SBP

Protein Properties

Length: 1081aa MW: 120031 Da PI: 7.3971

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098790.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.4	3.5e-37	154	231	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hsk++++lv ++ qrfCqqCsrfh+lsefDe+krsC +rLa+h +rrrk+q+ XP_028098790.1 154 VCQVDNCREDLSKAKDYHRRHKVCEIHSKSSTALVGKQIQRFCQQCSRFHHLSEFDEGKRSCGHRLAGHSRRRRKTQT 231 6**************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 1081 aa Download sequence
MEEVGAQISP SIFIHQPLPA QFCEGHPNPM AKKRNLSFQV QQQLASGFQI PGNIWKPKDW 60 DWDCVRFAAK PLESDVLHLG TSQLIQSEQH KIGRESSGIS TLLEKNPVDQ DNEILQLQLG 120 GSSNSLQECV SRPNKRVRSG SPGGGGSGNG SYPVCQVDNC REDLSKAKDY HRRHKVCEIH 180 SKSSTALVGK QIQRFCQQCS RFHHLSEFDE GKRSCGHRLA GHSRRRRKTQ TEDVSSRMLL 240 PGSHDNAGNG DLDIVNLLTV LARAQGNEEV NSPNCSSVPN KDQLIQILSK MNLLPLPVDF 300 ETKLPVSESL TSTVPEQSFS DYQNKLNRNM SSASTKDLLA VLSATLAAST PDALAILSQR 360 SSQGVEADKT KLACLEQALS LYMQRGTAFE FPSVGGESSN TSYQYPVEDS DCQVQEIRAN 420 LPLQLFSSSP EGDSLPKLTS ARKYFSSGSS NPMEETSPSS SPSVVQKLFP RQTTRETELE 480 RISAIQEVKE NVEISAAHGC VTSLELFGGS NRGADSGSFQ TLPYQAGYTS SSGSDHSPSS 540 LNSEAQVDRT GRIIFKLFGK DPSQLPGTLR TQVYNWLSHS PSEMESYIRP GCVVLSIYIS 600 MSSSSWEQLE GNLLQHVNSL VWDSATDFWR NGRFLVHTGR QLACHKDGKI RLCKSWTAWR 660 PPELISVSPL AVVGGQETSL FLRGRNLNIP GTKIHCTHGY LSKEVPGSAC QETIYDERSL 720 VRFKINGVSP AVLGRCFIEV ENGFKGTSFP VIIADANICQ ELRLLESELD EAAKIHDTIS 780 ENQICNFGRP GSKEEVLHFL NELGWLFQRK RNSSTIEVPD YTLTRFKFLF IFTVERDFCA 840 LVRTLLDMLL QRDLDRGEPS RESLEILSEI CLLNRAVKRR CRNMVELLIH YSVLSGNDTF 900 KYIFPPNLVG PGCITPLHLA ACTSSSDDIV DALTSDPQEI GLHCWNSLLD ANGLSPYAYA 960 LMRNNHSSNR LVTHKLADRK NGQVSVSIGN EIEQQCLRVN WEHQQRSQFK RGQRSCSNCA 1020 VVATRYNSRI AVSQGLLHRP YMHSILAIAA VCVCVCLFMR GHPNVNLVNP FKWENLGYGP 1080 M

Sequence ? help Back to Top

Protein Sequence Length: 1081 aa Download sequence

MEEVGAQISP SIFIHQPLPA QFCEGHPNPM AKKRNLSFQV QQQLASGFQI PGNIWKPKDW  60
DWDCVRFAAK PLESDVLHLG TSQLIQSEQH KIGRESSGIS TLLEKNPVDQ DNEILQLQLG  120
GSSNSLQECV SRPNKRVRSG SPGGGGSGNG SYPVCQVDNC REDLSKAKDY HRRHKVCEIH  180
SKSSTALVGK QIQRFCQQCS RFHHLSEFDE GKRSCGHRLA GHSRRRRKTQ TEDVSSRMLL  240
PGSHDNAGNG DLDIVNLLTV LARAQGNEEV NSPNCSSVPN KDQLIQILSK MNLLPLPVDF  300
ETKLPVSESL TSTVPEQSFS DYQNKLNRNM SSASTKDLLA VLSATLAAST PDALAILSQR  360
SSQGVEADKT KLACLEQALS LYMQRGTAFE FPSVGGESSN TSYQYPVEDS DCQVQEIRAN  420
LPLQLFSSSP EGDSLPKLTS ARKYFSSGSS NPMEETSPSS SPSVVQKLFP RQTTRETELE  480
RISAIQEVKE NVEISAAHGC VTSLELFGGS NRGADSGSFQ TLPYQAGYTS SSGSDHSPSS  540
LNSEAQVDRT GRIIFKLFGK DPSQLPGTLR TQVYNWLSHS PSEMESYIRP GCVVLSIYIS  600
MSSSSWEQLE GNLLQHVNSL VWDSATDFWR NGRFLVHTGR QLACHKDGKI RLCKSWTAWR  660
PPELISVSPL AVVGGQETSL FLRGRNLNIP GTKIHCTHGY LSKEVPGSAC QETIYDERSL  720
VRFKINGVSP AVLGRCFIEV ENGFKGTSFP VIIADANICQ ELRLLESELD EAAKIHDTIS  780
ENQICNFGRP GSKEEVLHFL NELGWLFQRK RNSSTIEVPD YTLTRFKFLF IFTVERDFCA  840
LVRTLLDMLL QRDLDRGEPS RESLEILSEI CLLNRAVKRR CRNMVELLIH YSVLSGNDTF  900
KYIFPPNLVG PGCITPLHLA ACTSSSDDIV DALTSDPQEI GLHCWNSLLD ANGLSPYAYA  960
LMRNNHSSNR LVTHKLADRK NGQVSVSIGN EIEQQCLRVN WEHQQRSQFK RGQRSCSNCA  1020
VVATRYNSRI AVSQGLLHRP YMHSILAIAA VCVCVCLFMR GHPNVNLVNP FKWENLGYGP  1080
M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	875	880	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein