PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028097377.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 250aa MW: 28717.1 Da PI: 4.7826 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.6 | 8.7e-15 | 9 | 49 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i ++ r++t+ kRr+g++KK +ELS+LCd+e+ ++i+ + XP_028097377.1 9 FITDNAARKTTLRKRRAGMIKKISELSTLCDIEAGIVIYNP 49 799999********************************965 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MTNRVKLAFI TDNAARKTTL RKRRAGMIKK ISELSTLCDI EAGIVIYNPG EVTPTVWPSY 60 EYMKQMFKRF LSMSIIDRSQ KMVTYEGYII QIITKETENN ITEKKNNDKK EIQEIMNQTF 120 EGNDLNELDM TILNLLSLLA DDKLKQLKKK QNWPRGQQMA LLPPPPLSPV LAPEIIEVEE 180 GIRAPTNGED GESSIRMIIQ ELMNDQCFME TTAEHMELLL SKDVEGTSSS KNEEDLPKDL 240 NEVFPHIYFP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65300.1 | 1e-16 | M-type_MADS family protein |