PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096225.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C3H

Protein Properties

Length: 341aa MW: 38470.7 Da PI: 7.8616

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26	1.6e-08	87	112	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C f++ G C+ G+ C+FaHgp XP_028096225.1 87 YKTRMCLKFLE-GNCRNGEHCTFAHGP 112 9********.***********96 PP
2	zf-CCCH	28.9	2e-09	147	171	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k+++C++f+ + +C+yGd+C+F H XP_028096225.1 147 KMKICKRFYNGEECPYGDKCNFLHE 171 7899****66**********5 PP
3	zf-CCCH	43.8	4.1e-14	229	254	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC + tG+C++G+rC+FaHg XP_028096225.1 229 WKTKLCIKWETTGQCPFGERCHFAHG 254 8************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
MSFPDPQPQP PFVPPFSQGD IVGFWPQIPL NDEDMDSHSQ FDHGPLFKKP RNFGNNPANS 60 TPFPPMNPRI MDLTNPPINR GTGHIFYKTR MCLKFLEGNC RNGEHCTFAH GPEDLREPPP 120 NWQEIVGARD KDKGLGNWNN DQRMVHKMKI CKRFYNGEEC PYGDKCNFLH EQKFKTEMGS 180 PRECSAISIG TTGSMVGNRS VSDQFEVNTN KHVNASSDDF RDYMKPTYWK TKLCIKWETT 240 GQCPFGERCH FAHGLSELQA PGGHIEAEAV NTLSIPTKPV LVPANDVVPP SRTVVCAPAK 300 EDVKGKKCFP KWKGAKKIDR IYADWIDDLT PPLSLPNKVQ S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-84	C3H family protein