PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_028096064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 248aa MW: 26864.2 Da PI: 6.5056 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 1.9e-22 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ks+ qvtfskRr+gi+KKA EL vLC+a vavi+ s+ gk++ + XP_028096064.1 9 KKIEKKSQLQVTFSKRRAGIFKKAGELGVLCGAHVAVIVTSPAGKVFAF 57 68********************************************988 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence |
MGLQKIEIKK IEKKSQLQVT FSKRRAGIFK KAGELGVLCG AHVAVIVTSP AGKVFAFGNP 60 SVDSVIDRFL SENPNPNPNS HGFDTCHDDE LHQVHQQSIN PNPNSNSQCS ERHRVSKNPN 120 PNPNSQCLDM CHEEEVRQVQ QLSKKYVKAV GKLEAEKERG KAVAELNSGG GGGGFWWDES 180 VEGLELHELE QYVAALEVLK SNLLARADEM AVAASGFPAN FLASNGVVVA NAFGSAECSG 240 FGFDCKPF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 8e-29 | M-type_MADS family protein |