PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096058.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

M-type_MADS

Protein Properties

Length: 257aa MW: 28019.5 Da PI: 6.9896

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096058.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.1	2.1e-22	18	66	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ie ks+ qvtfskRr+gi+KKA EL vLC+a vavi+ s+ gk++ + XP_028096058.1 18 KKIEKKSQLQVTFSKRRAGIFKKAGELGVLCGAHVAVIVTSPAGKVFAF 66 68********************************************988 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MENKQKKHSM GRQKIEIKKI EKKSQLQVTF SKRRAGIFKK AGELGVLCGA HVAVIVTSPA 60 GKVFAFGNPS VDSVIDRFLS ENPNPNPNSH GFDTCHDDEL HQVHQQSINP NPNSNSQCSE 120 RHRVSKNPNP NPNSQCLDMC HEEEVRQVQQ LSKKYVKAVG KLEAEKERGK AVAELNSGGG 180 GGGFWWDESV EGLELHELEQ YVAALEVLKS NLLARADEMA VAASGFPANF LASNGVVVAD 240 AFGSAECSGF GFDCKPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	1e-30	M-type_MADS family protein