PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028096017.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

SRS

Protein Properties

Length: 467aa MW: 48268.8 Da PI: 7.4219

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028096017.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	217.3	3.5e-67	247	404	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskk 98 +++CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpa++rrerq ++aaa+++a +s +++ +k++r +++++++s+t++s+ ++++ XP_028096017.1 247 SATTCQDCGNQAKKDCTHRRCRTCCKSRGFDCATHVKSTWVPASRRRERQLMAAAAAATAGSSGSTSGAKKPRLI-NSQTTTTSHTSTSN-TPPR 339 5689************************************************999999999999999999976.55555566666555.5777 PP DUF702 99 eletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++tss lP +++++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG e XP_028096017.1 340 SFDTSSshqdasfkegLPGQLRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGEE 404 888888899****************************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 467 aa Download sequence
IYIEIYIKIG IGIEICYQSE SAVVATRRLP SDSGAFADWV ASSSTSGRAA EDLSLGFNAG 60 PTAGGGSAST TAGGGSGGGG GMWSSATTRH HQINYGLPPE MGMVGLRDVF VVAPASSFHH 120 HHNNNNNNSN EPIISDPHHH HAINASNAAA ATALGVGVGV IPLLTATPCL PDEDVLNNNN 180 RCRSSSGIQF WQNQQSQQQQ QQQHSNYLKK PMFLDHTSPS NFMQTQTGTT GTGTGTGIGG 240 GSASSSSATT CQDCGNQAKK DCTHRRCRTC CKSRGFDCAT HVKSTWVPAS RRRERQLMAA 300 AAAATAGSSG STSGAKKPRL INSQTTTTSH TSTSNTPPRS FDTSSSHQDA SFKEGLPGQL 360 RAPAVFKCVR VTAVDDGEDE YAYQAVVKIG GHVFKGFLYD QGEEGRDGFP DISELHLGGG 420 VGGNGGGGGG GRNGASSSSP ILDPSDVYAA PGGGGFLGGS SYGNQIN

Sequence ? help Back to Top

Protein Sequence Length: 467 aa Download sequence

IYIEIYIKIG IGIEICYQSE SAVVATRRLP SDSGAFADWV ASSSTSGRAA EDLSLGFNAG  60
PTAGGGSAST TAGGGSGGGG GMWSSATTRH HQINYGLPPE MGMVGLRDVF VVAPASSFHH  120
HHNNNNNNSN EPIISDPHHH HAINASNAAA ATALGVGVGV IPLLTATPCL PDEDVLNNNN  180
RCRSSSGIQF WQNQQSQQQQ QQQHSNYLKK PMFLDHTSPS NFMQTQTGTT GTGTGTGIGG  240
GSASSSSATT CQDCGNQAKK DCTHRRCRTC CKSRGFDCAT HVKSTWVPAS RRRERQLMAA  300
AAAATAGSSG STSGAKKPRL INSQTTTTSH TSTSNTPPRS FDTSSSHQDA SFKEGLPGQL  360
RAPAVFKCVR VTAVDDGEDE YAYQAVVKIG GHVFKGFLYD QGEEGRDGFP DISELHLGGG  420
VGGNGGGGGG GRNGASSSSP ILDPSDVYAA PGGGGFLGGS SYGNQIN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.1	2e-69	SRS family protein